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NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

Home Page: http://deepchrome.org

License: MIT License

Lua 49.73% Python 27.24% Jupyter Notebook 23.03%
deep-learning epigenetic-data deep-neural-network interpretable-deep-learning

attentivechrome's Issues

Dataset split problem

Here I had two questions about your Datasets:

  1. why you divide data into three equal parts(train/test/validation) in advance?
  2. What is the data set divided according to?
    When I ran the toy dataset, the AUC score is extremely low, which led me to think if there is a problem with the data division.

dataset

Hi,

when I downloaded data from REMC I found out that there are E001-H3K4me1, E002-H3K4me1 and so on. So which one should I choose?

Eric

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