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singularity-meme-suite

The MEME Suite allows you to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses.

singularity-methylpy

METHYLPY, is an analysis pipeline for DNA methylation data.

singularity-ncdu

ncdu is a disk utility for Unix systems

singularity-ncview

ncview is a visual browser for netCDF format files.

singularity-octave

GNU Octave is software featuring a high-level programming language, primarily intended for numerical computations

singularity-pandiff

Prose diffs for any document format supported by Pandoc

singularity-pandoc

Pandoc is a free and open-source document converter, widely used as a writing tool and as a basis for publishing workflows.

singularity-phylip-suite

PHYLIP is a free package of programs for inferring phylogenies.

singularity-picard

Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

singularity-prodigal

Fast, reliable protein-coding gene prediction for prokaryotic genomes.

singularity-prokka

Prokka: rapid prokaryotic genome annotation.

singularity-raw2ometiff

Raw format to OME-TIFF converter.

singularity-raxml

RAxML - Randomized Axelerated Maximum Likelihood.

singularity-rclone

Rclone is a command line program to manage files on cloud storage. It is a feature rich alternative to cloud vendors' web storage interfaces.

singularity-rich-cli

Build amazing TUIs (Text User Interfaces) with this innovative Python framework.

singularity-rnaview

singularity-rust

singularity-salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

singularity-samtools

Samtools is a suite of programs for interacting with high-throughput sequencing data.

singularity-shellcheck

ShellCheck, a static analysis tool for shell scripts

singularity-spades

SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies.

singularity-sra-toolkit

Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.

singularity-star

Spliced Transcripts Alignment to a Reference.

singularity-star-fusion

STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT).

singularity-tiger

Target/Integrative Genetic Element Retriever

singularity-tokei

Count your code, quickly.

singularity-trimmomatic

Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data

singularity-vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

singularity-vcftools

singularity-viennarna

The ViennaRNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures.