pscedu / singularity-methylpy

METHYLPY, is an analysis pipeline for DNA methylation data.

singularity-methylpy

Singularity recipe for METHYLPY.

Installing the container on Bridges 2

Copy the

• SIF file
• and the Perl scripts

to /opt/packages/methylpy/1.4.3.

Copy the file modulefile.lua to /opt/modulefiles/methylpy as 1.4.3.lua.

Building the image using the recipe

To build the image locally

Run the script build.sh to build image locally.

bash ./build.sh

To build the image remotely

Run the script rbuild.sh to build image remotely.

bash ./rbuild.sh

To run tests

To run the available tests, run the command

bash ./test.sh

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Copyright © 2020-2021 Pittsburgh Supercomputing Center. All Rights Reserved.

The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.

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