peterk87 / fast5watch Goto Github PK
View Code? Open in Web Editor NEWNanopore run watcher
Nanopore run watcher
The run-watcher
component should be robust to errors.
For example, if encountering java.nio.file.AccessDeniedException
Exception in thread "Thread-26" java.nio.file.AccessDeniedException: /tmp/fast5watch-dev-test/some/path/to/fast5/
at sun.nio.fs.UnixException.translateToIOException(UnixException.java:84)
at sun.nio.fs.UnixException.asIOException(UnixException.java:111)
at sun.nio.fs.LinuxWatchService$Poller.implRegister(LinuxWatchService.java:266)
at sun.nio.fs.AbstractPoller.processRequests(AbstractPoller.java:260)
at sun.nio.fs.LinuxWatchService$Poller.run(LinuxWatchService.java:364)
at java.lang.Thread.run(Thread.java:748)
the watcher thread dies and currently need to go into the REPL and restart it.
Use libpython-clj to import Python modules and functions and use them within the app.
Required Python libraries
e.g. in the (dev|prod)-config.edn
{:port 3000
:external-http-endpoint "http://123.45.67.89:9000/api/fast5watch"
}
New run and fast5 info would be HTTP POSTed to the endpoint.
/run
and /run/<id>/fast5
endpoints?Requires #3
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.