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Name: Peter Kruczkiewicz
Type: User
Company: Canadian Food Inspection Agency
Location: Canada
Name: Peter Kruczkiewicz
Type: User
Company: Canadian Food Inspection Agency
Location: Canada
Intro presentation on Nextflow given 2019-04-08
An Intro to Nextflow (2020-08-20)
pharokka and phold annotation of ASFV genome NC_044954.1
Automated Oligonucleotide Design Pipeline (AODP) from https://bitbucket.org/wenchen_aafc/aodp_v2.0_release/
Taxonomic classification of DNA sequences
Conda recipes for the bioconda channel.
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
BLAST XLSX Report Creator and Sequence Sorter
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
A cookiecutter template for Snakemake workflows
This Snakemake pipeline implements the GATK best-practices workflow
IQ-TREE Alpine Docker container
Install and run Oxford Nanopore's MinKNOW software on other Linux distros
Docker container for compiled TMAP and TVC tools from the Thermo Fisher Ion Torrent Suite
Nanopore run watcher
Quickly save FASTA sequences to an LMDB key-value database for rapid retrieval.
Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.
Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML
Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
Enhancing `ggplot2` plots with statistical analysis ππ¨π£
Basic service wrapping PyGuppyClient talking to fast5watch
Subtype Salmonella enterica subsp. enterica serovar Heidelberg genomes using an in-silico 33 bp k-mer subtyping method developed by Genevieve Labbe, Roger Johnson, et al from the Public Health Agency of Canada.
Canadaβs Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
Sequence file uploader for IRIDA
Iterative Refinement Meta-Assembler
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
π Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. πππ
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google β€οΈ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.