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jvm-breakglass

This project generates a jar file that you can dump into a Java or Clojure project to startup a repl or an nrepl server to listen on a port. Once the repl is started, you can access it with an nRepl client.

landmark

Implementation of a decision tree ensemble which splits each node using learned linear and non-linear functions.

longshot

diploid SNV caller for error-prone reads

metalign

Metalign: efficient alignment-based metagenomic profiling via containment min hash

miniontoolkit

miso-lims

MISO: An open-source LIMS for NGS sequencing centres

multi-package-containers

Testing building mulled containers for multi-requirement tools.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nf-bh-typing-comparison

Nextflow workflow to benchmark biohansel, SKA, genotyphi and tb-profiler

nf-biohansel-snippy-comparison

nf-biohansel-sra-benchmark

Nextflow workflow for benchmarking biohansel and Snippy with NCBI SRA genomes

nf-centrifuge-build

Nextflow workflow to build a Centrifuge index

nf-cleanplex-preprocess

Nextflow workflow to preprocess and trim primers from Paragon Genomics SARS-CoV-2 CleanPlex Illumina sequence data.

nf-core-tools

Python package with helper tools for the nf-core community.

nf-flu

Influenza genome analysis Nextflow workflow

nf-iav-ont

nf-illmap

Nextflow workflow for Illumina read mapping, variant calling and consensus sequence generation using Snippy

nf-ionampliseq

nf-test-datasets

Nextflow workflow test datasets for CI

nf-villumina

Generic viral Illumina sequence analysis pipeline

nf-virontus

Oxford Nanopore reference mapping, taxonomic classification, de novo assembly workflow primarily for viral sequence data

on_deer_spillback_analyses

package_control_channel

Default channel file for Package Control. Follow the directions at:

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

phylocanvas

Core Phylocanvas Library.

phylocanvas-plugin-metadata

Display binary data adjacent to tree leaves.

phylogenetictree

primalscheme

pyahocorasick-feedstock

A conda-smithy repository for pyahocorasick.

quickfastacheck

R package to quickly check if a file is a valid nucleotide FASTA file.