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check paired-end FASTQ data integrity

License: MIT License

Makefile 0.34% C++ 20.67% C 72.66% Objective-C 6.32%
paired-end pe check integrity fastq illumina identical consistence bioinformatics

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pecheck's Issues

Add test description to README

Would it be possible to get a description of what the program checks for on the FASTQ files? For example:

  • gzip file corrupted
  • length of read and quality
  • read IDs match on both R1 and R2 files
  • number of reads on R1 and R2 files
  • duplicated read IDs
  • ...

thanks,

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