Saw your recent presentations about the Perseus project at various OHDSI calls - amazing work! Very excited about it and have already started exploring how to use it. With that said, I have run into a variety of errors with setting up Perseus and am blocked. Was hoping I could receive some assistance. The following sections break up what I have encountered.
Instead, of the above process working, the process fails and I am unable to access Perseus. Here is the error message that I see after everything builds:
STEP 1/33: FROM r-base:4.1.3
STEP 2/33: ARG prop=default
--> Using cache f50afaf4061e1e70d6eaa1cbb3f66647737ae4f67aa92c027926e8252f11e1b6
--> f50afaf4061
STEP 3/33: RUN apt-get update
Get:1 http://deb.debian.org/debian testing InRelease [161 kB]
Get:2 http://deb.debian.org/debian testing/main amd64 Packages [8,490 kB]
Get:3 http://cdn-fastly.deb.debian.org/debian sid InRelease [158 kB]
Get:4 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages [9,343 kB]
Fetched 18.2 MB in 3s (6,197 kB/s)
Reading package lists...['podman', '--version', '']
using podman version: 4.1.1
** excluding: set()
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_web']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_shareddb']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_frontend']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_vocabularydb']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_files-manager']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_user']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_solr']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_r-serve']
podman build -t perseus_r-serve -f ../DataQualityDashboard/R/Dockerfile --build-arg prop=docker ../DataQualityDashboard/R
exit code: 134
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_backend']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_white-rabbit']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_athena']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_cdm-builder']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_usagi']
['podman', 'inspect', '-t', 'image', '-f', '{{.Id}}', 'perseus_data-quality-dashboard']
['podman', 'network', 'exists', 'perseus_default']
podman create --name=web --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=web --net perseus_default --network-alias web -p 80:80 --restart always perseus_web
exit code: 125
podman volume inspect perseus_shareddb || podman volume create perseus_shareddb
['podman', 'volume', 'inspect', 'perseus_shareddb']
['podman', 'network', 'exists', 'perseus_default']
podman create --name=shareddb --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=shareddb -v perseus_shareddb:/data/postgres --net perseus_default --network-alias shareddb -p 5432:5432 perseus_shareddb
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
podman create --name=frontend --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=frontend --net perseus_default --network-alias frontend -p 4200:4200 perseus_frontend
exit code: 125
podman volume inspect perseus_vocabularydb || podman volume create perseus_vocabularydb
['podman', 'volume', 'inspect', 'perseus_vocabularydb']
['podman', 'network', 'exists', 'perseus_default']
podman create --name=vocabularydb --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=vocabularydb -v perseus_vocabularydb:/data/postgres --net perseus_default --network-alias vocabularydb -p 5431:5432 --healthcheck-command /bin/sh -c pg_isready' '-q' '-d' 'vocabulary' '-U' 'perseus --healthcheck-interval 30s --healthcheck-timeout 60s --healthcheck-retries 10 perseus_vocabularydb
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
podman create --name=files-manager --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=files-manager -e SPRING_PROFILES_ACTIVE=docker --net perseus_default --network-alias files-manager -p 10500:10500 perseus_files-manager
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
podman create --name=user --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=user --env-file /home/[email protected]/FOSS/Perseus/user/user-envs.txt -e USER_ENV=Docker --net perseus_default --network-alias user -p 5001:5001 perseus_user
exit code: 125
podman volume inspect perseus_solr || podman volume create perseus_solr
['podman', 'volume', 'inspect', 'perseus_solr']
['podman', 'network', 'exists', 'perseus_default']
podman create --name=solr --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=solr -v perseus_solr:/var/solr --net perseus_default --network-alias solr -p 8983:8983 perseus_solr
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
podman create --name=r-serve --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=r-serve --net perseus_default --network-alias r-serve -p 6311:6311 perseus_r-serve
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
podman create --name=backend --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=backend -e PERSEUS_ENV=Docker --net perseus_default --network-alias backend -p 5000:5000 perseus_backend
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
podman create --name=white-rabbit --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/[email protected]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=white-rabbit -e SPRING_PROFILES_ACTIVE=docker --net perseus_default --network-alias white-rabbit -p 8000:8000 perseus_white-rabbit
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
Starting OpenBSD Secure Shell server: sshd.
PostgreSQL Database directory appears to contain a database; Skipping initialization
Starting OpenBSD Secure Shell server: sshd.
PostgreSQL Database directory appears to contain a database; Skipping initialization
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WhiteRabbitService 0.4.0
Powered by Spring Boot 2.6.3
2022-09-29 20:08:03.576 INFO 1 --- [ main] c.a.w.WhiteRabbitServiceApplication : Starting WhiteRabbitServiceApplication v0.4.0 using Java 17.0.2 on 46a72233bf0d with PID 1 (/app.jar started by root in /)
2022-09-29 20:08:03.578 INFO 1 --- [ main] c.a.w.WhiteRabbitServiceApplication : The following profiles are active: docker
2022-09-29 20:08:04.538 INFO 1 --- [ main] .s.d.r.c.RepositoryConfigurationDelegate : Bootstrapping Spring Data JPA repositories in DEFAULT mode.
2022-09-29 20:08:04.723 INFO 1 --- [ main] .s.d.r.c.RepositoryConfigurationDelegate : Finished Spring Data repository scanning in 176 ms. Found 9 JPA repository interfaces.
2022-09-29 20:08:05.539 INFO 1 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat initialized with port(s): 8000 (http)
2022-09-29 20:08:05.555 INFO 1 --- [ main] o.apache.catalina.core.StandardService : Starting service [Tomcat]
2022-09-29 20:08:05.556 INFO 1 --- [ main] org.apache.catalina.core.StandardEngine : Starting Servlet engine: [Apache Tomcat/9.0.56]
2022-09-29 20:08:05.617 INFO 1 --- [ main] o.a.c.c.C.[.[localhost].[/white-rabbit] : Initializing Spring embedded WebApplicationContext
2022-09-29 20:08:05.617 INFO 1 --- [ main] w.s.c.ServletWebServerApplicationContext : Root WebApplicationContext: initialization completed in 1992 ms
2022-09-29 20:08:05.848 INFO 1 --- [ main] o.hibernate.jpa.internal.util.LogHelper : HHH000204: Processing PersistenceUnitInfo [name: default]
2022-09-29 20:08:05.964 INFO 1 --- [ main] org.hibernate.Version : HHH000412: Hibernate ORM core version 5.6.4.Final
2022-09-29 20:08:06.196 INFO 1 --- [ main] o.hibernate.annotations.common.Version : HCANN000001: Hibernate Commons Annotations {5.1.2.Final}
2022-09-29 20:08:06.367 INFO 1 --- [ main] com.zaxxer.hikari.HikariDataSource : HikariPool-1 - Starting...
2022-09-29 20:08:06.681 INFO 1 --- [ main] com.zaxxer.hikari.HikariDataSource : HikariPool-1 - Start completed.
2022-09-29 20:08:06.702 INFO 1 --- [ main] org.hibernate.dialect.Dialect : HHH000400: Using dialect: org.hibernate.dialect.PostgreSQLDialect
App config initialized
2022-09-29 20:08:08.389 INFO 1 --- [ main] o.h.e.t.j.p.i.JtaPlatformInitiator : HHH000490: Using JtaPlatform implementation: [org.hibernate.engine.transaction.jta.platform.internal.NoJtaPlatform]
2022-09-29 20:08:08.400 INFO 1 --- [ main] j.LocalContainerEntityManagerFactoryBean : Initialized JPA EntityManagerFactory for persistence unit 'default'
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| .-. \ ,--,--. ,-' '-. ,--,--. ' .-. ' ,--.,--. ,--,--. | | `--' ,-' '-. ,--. ,--. | .-. \ ,--,--. ,---. | ,---. | |-. ,---. ,--,--. ,--.--. ,-| |
| | \ : ' ,-. | '-. .-' ' ,-. | | | | | | || | ' ,-. | | | ,--. '-. .-' \ ' / | | \ : ' ,-. | ( .-' | .-. | | .-. ' | .-. | ' ,-. | | .--' ' .-. |
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`---'
DataQualityDashboard 0.0.4
Powered by Spring Boot 2.6.3
2022-09-29 20:08:09.316 INFO 1 --- [ main] c.a.D.DataQualityDashboardApplication : Starting DataQualityDashboardApplication v0.0.4 using Java 17-ea on 68e203986cb1 with PID 1 (/app.jar started by root in /)
2022-09-29 20:08:09.320 INFO 1 --- [ main] c.a.D.DataQualityDashboardApplication : The following profiles are active: docker
2022-09-29 20:08:09.410 WARN 1 --- [ main] JpaBaseConfiguration$JpaWebConfiguration : spring.jpa.open-in-view is enabled by default. Therefore, database queries may be performed during view rendering. Explicitly configure spring.jpa.open-in-view to disable this warning
2022-09-29 20:08:09.802 INFO 1 --- [ main] c.a.c.i.jackson.JacksonVersion : Package versions: jackson-annotations=2.13.1, jackson-core=2.13.1, jackson-databind=2.13.1, jackson-dataformat-xml=2.13.1, jackson-datatype-jsr310=2.13.1, azure-core=1.26.0, Troubleshooting version conflicts: https://aka.ms/azsdk/java/dependency/troubleshoot
2022-09-29 20:08:09.883 INFO 1 --- [ main] AbstractAzureServiceClientBuilderFactory : Will configure the default credential of type DefaultAzureCredential for class com.azure.identity.DefaultAzureCredentialBuilder.
2022-09-29 20:08:10.342 INFO 1 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat started on port(s): 8000 (http) with context path '/white-rabbit'
2022-09-29 20:08:10.359 INFO 1 --- [ main] c.a.w.WhiteRabbitServiceApplication : Started WhiteRabbitServiceApplication in 7.337 seconds (JVM running for 7.835)
2022-09-29 20:08:10.574 INFO 1 --- [ main] .s.d.r.c.RepositoryConfigurationDelegate : Bootstrapping Spring Data JPA repositories in DEFAULT mode.
2022-09-29 20:08:10.762 INFO 1 --- [ main] .s.d.r.c.RepositoryConfigurationDelegate : Finished Spring Data repository scanning in 177 ms. Found 3 JPA repository interfaces.
2022-09-29 20:08:11.294 INFO 1 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat initialized with port(s): 8001 (http)
2022-09-29 20:08:11.305 INFO 1 --- [ main] o.apache.catalina.core.StandardService : Starting service [Tomcat]
2022-09-29 20:08:11.305 INFO 1 --- [ main] org.apache.catalina.core.StandardEngine : Starting Servlet engine: [Apache Tomcat/9.0.56]
2022-09-29 20:08:11.347 INFO 1 --- [ main] o.a.c.c.C.[.[.[/data-quality-dashboard] : Initializing Spring embedded WebApplicationContext
2022-09-29 20:08:11.347 INFO 1 --- [ main] w.s.c.ServletWebServerApplicationContext : Root WebApplicationContext: initialization completed in 1946 ms
2022-09-29 20:08:11.532 INFO 1 --- [ main] o.hibernate.jpa.internal.util.LogHelper : HHH000204: Processing PersistenceUnitInfo [name: default]
2022-09-29 20:08:11.585 INFO 1 --- [ main] org.hibernate.Version : HHH000412: Hibernate ORM core version 5.6.4.Final
2022-09-29 20:08:11.772 INFO 1 --- [ main] o.hibernate.annotations.common.Version : HCANN000001: Hibernate Commons Annotations {5.1.2.Final}
2022-09-29 20:08:11.896 INFO 1 --- [ main] com.zaxxer.hikari.HikariDataSource : HikariPool-1 - Starting...
2022-09-29 20:08:12.100 INFO 1 --- [ main] com.zaxxer.hikari.HikariDataSource : HikariPool-1 - Start completed.
2022-09-29 20:08:12.119 INFO 1 --- [ main] org.hibernate.dialect.Dialect : HHH000400: Using dialect: org.hibernate.dialect.PostgreSQLDialect
2022-09-29 20:08:12.906 INFO 1 --- [ main] o.h.e.t.j.p.i.JtaPlatformInitiator : HHH000490: Using JtaPlatform implementation: [org.hibernate.engine.transaction.jta.platform.internal.NoJtaPlatform]
2022-09-29 20:08:12.916 INFO 1 --- [ main] j.LocalContainerEntityManagerFactoryBean : Initialized JPA EntityManagerFactory for persistence unit 'default'
2022-09-29 20:08:13.423 WARN 1 --- [ main] JpaBaseConfiguration$JpaWebConfiguration : spring.jpa.open-in-view is enabled by default. Therefore, database queries may be performed during view rendering. Explicitly configure spring.jpa.open-in-view to disable this warning
2022-09-29 20:08:13.617 INFO 1 --- [ main] o.s.b.a.w.s.WelcomePageHandlerMapping : Adding welcome page: class path resource [static/index.html]
2022-09-29 20:08:13.747 INFO 1 --- [ main] c.a.c.i.jackson.JacksonVersion : Package versions: jackson-annotations=2.13.1, jackson-core=2.13.1, jackson-databind=2.13.1, jackson-dataformat-xml=2.13.1, jackson-datatype-jsr310=2.13.1, azure-core=1.26.0, Troubleshooting version conflicts: https://aka.ms/azsdk/java/dependency/troubleshoot
2022-09-29 20:08:13.813 INFO 1 --- [ main] AbstractAzureServiceClientBuilderFactory : Will configure the default credential of type DefaultAzureCredential for class com.azure.identity.DefaultAzureCredentialBuilder.
2022-09-29 20:08:14.058 INFO 1 --- [ main] o.s.b.w.embedded.tomcat.TomcatWebServer : Tomcat started on port(s): 8001 (http) with context path '/data-quality-dashboard'
2022-09-29 20:08:14.066 INFO 1 --- [ main] c.a.D.DataQualityDashboardApplication : Started DataQualityDashboardApplication in 5.804 seconds (JVM running for 7.004)
2022-09-29 20:08:14.087 INFO 1 --- [ main] ConditionEvaluationReportLoggingListener :
Error starting ApplicationContext. To display the conditions report re-run your application with 'debug' enabled.
2022-09-29 20:08:14.102 ERROR 1 --- [ main] o.s.boot.SpringApplication : Application run failed
java.lang.IllegalStateException: Failed to execute CommandLineRunner
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:772) ~[spring-boot-2.6.3.jar!/:2.6.3]
at org.springframework.boot.SpringApplication.callRunners(SpringApplication.java:753) ~[spring-boot-2.6.3.jar!/:2.6.3]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:309) ~[spring-boot-2.6.3.jar!/:2.6.3]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1303) ~[spring-boot-2.6.3.jar!/:2.6.3]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:1292) ~[spring-boot-2.6.3.jar!/:2.6.3]
at com.arcadia.DataQualityDashboard.DataQualityDashboardApplication.main(DataQualityDashboardApplication.java:17) ~[classes!/:0.0.4]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:78) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Method.java:568) ~[na:na]
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:49) ~[app.jar:0.0.4]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:108) ~[app.jar:0.0.4]
at org.springframework.boot.loader.Launcher.launch(Launcher.java:58) ~[app.jar:0.0.4]
at org.springframework.boot.loader.JarLauncher.main(JarLauncher.java:88) ~[app.jar:0.0.4]
Caused by: com.arcadia.DataQualityDashboard.service.error.RException: Cannot connect: r-serve
at com.arcadia.DataQualityDashboard.service.r.RConnectionCreatorImpl.createRConnection(RConnectionCreatorImpl.java:70) ~[classes!/:0.0.4]
at com.arcadia.DataQualityDashboard.DataQualityDashboardApplication.lambda$run$0(DataQualityDashboardApplication.java:24) ~[classes!/:0.0.4]
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:769) ~[spring-boot-2.6.3.jar!/:2.6.3]
... 13 common frames omitted
Caused by: org.rosuda.REngine.Rserve.RserveException: Cannot connect: r-serve
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:90) ~[Rserve-1.8.1.jar!/:na]
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:60) ~[Rserve-1.8.1.jar!/:na]
at com.arcadia.DataQualityDashboard.service.r.RConnectionCreatorImpl.createRConnection(RConnectionCreatorImpl.java:56) ~[classes!/:0.0.4]
... 15 common frames omitted
Caused by: java.net.UnknownHostException: r-serve
at java.base/sun.nio.ch.NioSocketImpl.connect(NioSocketImpl.java:567) ~[na:na]
at java.base/java.net.SocksSocketImpl.connect(SocksSocketImpl.java:331) ~[na:na]
at java.base/java.net.Socket.connect(Socket.java:630) ~[na:na]
at java.base/java.net.Socket.connect(Socket.java:581) ~[na:na]
at java.base/java.net.Socket.<init>(Socket.java:505) ~[na:na]
at java.base/java.net.Socket.<init>(Socket.java:285) ~[na:na]
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:85) ~[Rserve-1.8.1.jar!/:na]
... 17 common frames omitted
2022-09-29 20:08:14.115 INFO 1 --- [ main] j.LocalContainerEntityManagerFactoryBean : Closing JPA EntityManagerFactory for persistence unit 'default'
2022-09-29 20:08:14.117 INFO 1 --- [ main] com.zaxxer.hikari.HikariDataSource : HikariPool-1 - Shutdown initiated...
2022-09-29 20:08:14.121 INFO 1 --- [ main] com.zaxxer.hikari.HikariDataSource : HikariPool-1 - Shutdown completed.
10.89.0.1 - - [29/Sep/2022:20:12:05 +0000] "GET / HTTP/1.1" 499 0 "-" "Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/104.0.5112.115 Safari/537.36" "-"
10.89.0.1 - - [29/Sep/2022:20:13:05 +0000] "GET / HTTP/1.1" 504 569 "-" "Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/104.0.5112.115 Safari/537.36" "-"
podman create --name=athena --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/jzelko3@[REDACTED]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=athena -e ATHENA_ENV=Docker --net perseus_default --network-alias athena -p 5002:5002 perseus_athena
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
podman create --name=cdm-builder --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/jzelko3@[REDACTED]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=cdm-builder -e ASPNETCORE_ENVIRONMENT=Docker --net perseus_default --network-alias cdm-builder -p 9000:9000 perseus_cdm-builder
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
podman create --name=usagi --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/jzelko3@[REDACTED]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=usagi -e USAGI_ENV=Docker --net perseus_default --network-alias usagi -p 5003:5003 perseus_usagi python /app/main.py
exit code: 125
['podman', 'network', 'exists', 'perseus_default']
podman create --name=data-quality-dashboard --label io.podman.compose.config-hash=123 --label io.podman.compose.project=perseus --label io.podman.compose.version=0.0.1 --label com.docker.compose.project=perseus --label com.docker.compose.project.working_dir=/home/jzelko3@[REDACTED]/FOSS/Perseus --label com.docker.compose.project.config_files=docker-compose.yaml --label com.docker.compose.container-number=1 --label com.docker.compose.service=data-quality-dashboard -e SPRING_PROFILES_ACTIVE=docker --net perseus_default --network-alias data-quality-dashboard -p 8001:8001 perseus_data-quality-dashboard
exit code: 125
podman start -a web
podman start -a shareddb
podman start -a frontend
podman start -a vocabularydb
podman start -a files-manager
podman start -a user
podman start -a solr
podman start -a r-serve
exit code: 125
podman start -a backend
podman start -a white-rabbit
podman start -a athena
podman start -a cdm-builder
podman start -a usagi
podman start -a data-quality-dashboard
exit code: 1
exit code: 139
2022-09-29 20:13:35.925 INFO 1 --- [ionShutdownHook] j.LocalContainerEntityManagerFactoryBean : Closing JPA EntityManagerFactory for persistence unit 'default'
2022-09-29 20:13:35.927 INFO 1 --- [ionShutdownHook] com.zaxxer.hikari.HikariDataSource : HikariPool-1 - Shutdown initiated...
2022-09-29 20:13:35.949 INFO 1 --- [ionShutdownHook] com.zaxxer.hikari.HikariDataSource : HikariPool-1 - Shutdown completed.
Happy to report more on this so we can figure out what to do! Thanks for all the hard work so far!
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