nobrien97 / genetic-architecture-in-slim

Tracking evolution in forward-modelling software SLiM

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Hello, world! 👋

I'm Nick O'Brien, a PhD candidate in the Ortiz-Barrientos Lab at the University of Queensland, Australia. My research interests include constraints and drivers of polygenic adaptation, and computational methods to find these regulators of natural selection. My PhD focuses on investigating some of these adaptive regulators in the context of both additive quantitative genetics models and nonlinear gene regulatory network models, using forward-time genetic simulation approaches. In my free time, I like to listen to and write music, play video games, and code. I also like to mod video games - I have done a bit of everything: level design, environment art, voice acting, scripting, and music.

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genetic-architecture-in-slim's Issues

Mutation output incomplete in one line only

This seems pretty rare, has only happened once: mutation output: didn't put sim.generation at the front of one line in mutation outputs for the SFS_Test HPC run.
The total file is 191093 rows, and row 9835 lacks a sim.generation value.

The line references a mutation object which only just appeared ( 108 generations prior). The same mutation in the entry just prior (gen 78200 rather than 78300; line 9581) has no such issue, so it's unlikely to be a rogue if statement causing problems. Perhaps it's a problem with the write itself?