Comments (3)
theosanderson
commented on May 23, 2024
1
Unrelatedly, but to avoid spamming issues, one suggestion would be to consider excluding apostrophes from strain names as I think happens for SARS-CoV-2
from mpox.
rneher
commented on May 23, 2024
1
thanks Theo. I just merged PR #7 by @babarlelephant that fixed most of these issues. And fixed one more that you pointed out. We'll hopefully have a proper clade naming system soon. We'll also add an build containing the full diversity.
from mpox.
theosanderson
commented on May 23, 2024
With a slightly less naive tree than I had before I get
with orange indicating unexpected CA annotations
from mpox.
Related Issues (20)
- Ingest: differentiate `date_released` and `date_submitted` HOT 1
- ENH: Don't subsample non-B.1 lineages
- Add accession as tip label option -> easier for getting exclusion accessions quickly HOT 1
- update README. HOT 1
- Additionally produce Zstd compressed outputs in ingest
- /usr/bin/bash: line 1: tsv-filter: command not found HOT 2
- `IndexError: tuple index out of range` in Snakemake file related to Nextalign rule, line 127 HOT 12
- Transmission Line Visualization Feature in Monkeypox Pipeline, Similar to the ncov Build
- It seems that there is no Chinese sequence included?
- Rename repo & builds HOT 6
- CI is using an incompatible version of the Conda runtime HOT 22
- Ingest currently blocked by `fetch-from-ncbi-virus` HOT 2
- We seem to trigger each build twice after ingest HOT 1
- Reverse complement reverse-complemented sequences in ingest to reduce downstream complications
- Collection issue for things to bear in mind when moving a workflow to a folder
- Ingest: remove `reverse` column from metadata TSV HOT 1
- Potentially include year-only sequences
- `fix_tree.py` can create invalid tree HOT 1
- [phylo] CI workflow DAG includes `update_example_data`
- [phylo] traits input not passed to `augur export` HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from mpox.