Comments (3)
Hi @cbostwick87,
This is an error that was trigged by a dependency update. It has been resolved in NanoStringNCTools package versions >=1.1.1. Thanks for your session info! If you update from your above listed version of 1.0.0, this should resolve it. Let me know if you run into any issues.
Thanks,
Nicole
from nanostringnctools.
Hi @NicoleEO.
I have updated R to version 4.2.1, installed rtools 4.2, devtools, and installed the NanoStringNCTools_1.3.1 package using: devtools::install_github("Nanostring-Biostats/NanoStringNCTools", ref = "dev")
and
girafe(ggobj = autoplot(demoData, type = "housekeep-geom"))
appears to plot as described. Thank you for your help!
from nanostringnctools.
Hi,
I was following the vignette as well and ran into the same issue at the girafe(ggobj = autoplot(demoData, type = "housekeep-geom"))
and girafe(ggobj = autoplot(demoData, type = "lane-bindingDensity"))
steps.
I have the latest version of NanoStringNCTools package (1.7.1).
Thank you in advance for the kind help.
Here is my sessionInfo:
R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Monterey 12.6
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] pheatmap_1.0.12 ggiraph_0.8.5 ggthemes_4.2.4 NanoStringNCTools_1.7.1 ggplot2_3.4.0 S4Vectors_0.36.1
[7] Biobase_2.58.0 BiocGenerics_0.44.0
loaded via a namespace (and not attached):
[1] pkgload_1.3.2 shiny_1.7.4 assertthat_0.2.1 GenomeInfoDbData_1.2.9 vipor_0.4.5 remotes_2.4.2
[7] sessioninfo_1.2.2 pillar_1.8.1 glue_1.6.2 uuid_1.1-0 digest_0.6.31 RColorBrewer_1.1-3
[13] promises_1.2.0.1 XVector_0.38.0 colorspace_2.0-3 htmltools_0.5.4 httpuv_1.6.7 pkgconfig_2.0.3
[19] devtools_2.4.5 zlibbioc_1.44.0 purrr_1.0.0 xtable_1.8-4 scales_1.2.1 processx_3.8.0
[25] later_1.3.0 tibble_3.1.8 generics_0.1.3 farver_2.1.1 IRanges_2.32.0 usethis_2.1.6
[31] ellipsis_0.3.2 cachem_1.0.6 withr_2.5.0 cli_3.6.0 magrittr_2.0.3 crayon_1.5.2
[37] mime_0.12 memoise_2.0.1 ps_1.7.2 fs_1.5.2 fansi_1.0.3 beeswarm_0.4.0
[43] pkgbuild_1.4.0 profvis_0.3.7 tools_4.2.2 prettyunits_1.1.1 lifecycle_1.0.3 stringr_1.5.0
[49] munsell_0.5.0 callr_3.7.3 Biostrings_2.66.0 compiler_4.2.2 GenomeInfoDb_1.34.6 systemfonts_1.0.4
[55] rlang_1.0.6 grid_4.2.2 RCurl_1.98-1.9 rstudioapi_0.14 htmlwidgets_1.6.1 miniUI_0.1.1.1
[61] bitops_1.0-7 labeling_0.4.2 gtable_0.3.1 DBI_1.1.3 curl_4.3.3 R6_2.5.1
[67] dplyr_1.0.10 fastmap_1.1.0 utf8_1.2.2 rprojroot_2.0.3 desc_1.4.2 stringi_1.7.8
[73] ggbeeswarm_0.7.1 Rcpp_1.0.9 vctrs_0.5.1 tidyselect_1.2.0 urlchecker_1.0.1
from nanostringnctools.
Related Issues (20)
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