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Name: NanoString Technologies, Inc.
Type: Organization
Twitter: nanostringtech
Blog: https://nanostring.com
Name: NanoString Technologies, Inc.
Type: Organization
Twitter: nanostringtech
Blog: https://nanostring.com
Analyses from the manuscript, "Single cell spatial transcriptomic profiling of childhood-onset lupus nephritis reveals complex interactions between kidney stroma and infiltrating immune cells"
This repository is an exploratory resource to accelerate opensource analysis of CosMx™ Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
This repo is for visualizing an in-progress Minerva Story for CosMx.
Repository for custom module scripts for SMIDA
Analyses for Gedda & Danaher et al., "Longitudinal Transcriptional Analysis of Peripheral Blood Leukocytes in COVID Convalescent Donors"
Repository for DSP Plugins
FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.
GeoDiff, an R package for count generating models for analyzing Geomx RNA data. Note that this version of the package is still under development, undergoing submission process to Bioconductor 3.14 release and still needs to complete NanoString internal verification process.
Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.
Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages
InSituCor An R package for discovering modules of spatially correlated genes in spatial transcriptomics data.
Reproducible analyses for the InSituCor manuscript
An R package for performing cell typing in SMI and other single cell data
Analyses for the manuscript, "Insitutype: likelihood-based cell typing for single cell spatial transcriptomics"
Minerva Kidney Story
Tool to create images and configuration files for Minerva-Story
Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.