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pipeline-umi-amplicon

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

plasmid-map

Plasmid map visualisations for Metrichor reports

pod5-file-format

Pod5: a high performance file format for nanopore reads.

pomoxis

Analysis components from Oxford Nanopore Research

pore-c

Pore-C support

pore-c-snakemake

pychopper

A tool to identify, orient, trim and rescue full length cDNA reads

pyguppyclient

Python client library for Guppy

pyspoa

Python bindings to spoa

qcat

qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

read_until_api

Read Until client library for Nanopore Sequencing

remora

Methylation/modified base calling separated from basecalling.

rerio

Research release basecalling models and configurations

scrappie

Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group

sloika

Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling

sockeye

Single Cell Transcriptomics

spliced_bam2gff

sqlpad

Web-based SQL editor run in your own private cloud. Supports MySQL, Postgres, SQL Server, Vertica, Crate, ClickHouse, Trino, Presto, SAP HANA, Cassandra, Snowflake, BigQuery, SQLite, and more with ODBC

taiyaki

Training models for basecalling Oxford Nanopore reads

tfjs

A WebGL accelerated JavaScript library for training and deploying ML models.

tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

ts-argue

ts-runtime-typecheck

A collection of common types for TypeScript along with dynamic type cast methods.

u-boot

vbz-h5py-plugin

vbz_compression

VBZ compression plugin for nanopore signal data

vbz_js

JS bindings for VBZ compression

wub

Tools and software library developed by the ONT Applications group

yellowfin

Ubuntu community theme "yaru". Better than a 🌯.