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linux-minit-nvidia

ONT modified git://nv-tegra.nvidia.com/linux-nvidia.git.

linux4.9-minit

ONT fork of Linux for NVIDIA Tegra based devices

mako

Analyte identification via squiggles.

marine-phage-paper-scripts

medaka

Sequence correction provided by ONT Research

megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

minimap2

A fast sequence mapping and alignment program

minimappy

Python bindings to minimap2

minknow_api

Protobuf and gRPC specifications for the MinKNOW API

minknow_lims_interface

Protobuff and gRPC specifications for the MinKNOW LIMS Interface

nanopolish

Signal-level algorithms for MinION data

onesie

A Linux device-driver for the MinION-mk1C

onnxjs

ONNX.js: run ONNX models using JavaScript

ont-assembly-polish

ONT assembly and Illumina polishing pipeline

ont-minimap2

Cross platform builds for minimap2

ont-open-datasets

Website describing data releases, and providing additional resources.

ont_fast5_api

Oxford Nanopore Technologies fast5 API software

ont_h5_validator

ont_tutorial_basicqc

A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt

panga

pinfish

Tools to annotate genomes using long read transcriptomics data

pipeline-nanopore-denovo-isoforms

Pipeline for de novo clustering of long transcriptomic reads

pipeline-nanopore-ref-isoforms

Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools

pipeline-pinfish-analysis

Pipeline for annotating genomes using long read transcriptomics data with pinfish

pipeline-polya-diff

Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish

pipeline-polya-ng

Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolish

pipeline-pychopper

Utility pipeline for running pychopper, a tool to identify full length cDNA reads

pipeline-structural-variation

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

pipeline-transcriptome-de

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

pipeline-umi-amplicon

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers