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omicsingularities's Introduction

OmicSingularities

A set of recipies to build Singularity containers for analysis of omic data. In addition, pre-built containers with these recipies can be downloaded from SingularityHub

  • Pre-processing QC (preQC): a containerized environment with software for quality control and preprocessing of sequencing data. Resulting image is built with CentOS 7 as base OS and Python 3.6. Although this is a companion container of the MetagenomicSnake workflow, it can also be used separately.
  • meta16S : a containerized environment for 16S-rRNA-gene sequencing data analysis with QIIME2.
  • MetaProf: a containerized/singularized environment for taxonomic and functional profiling of metagenomic shotgun data.

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