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atlas

:earth_americas: ATLAS - workflows for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data.

awesome-microbes

List of computational resources for analyzing microbial sequencing data.

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

curatedmetagenomicdata

test package for Levi's data

data-science-is-software

datasciencecoursera

repository for The Scientist's toolbox Coursera course

datasharing

The Leek group guide to data sharing

fiber-data_records

This repository contains the codes used in the processing of dietary fiber intervention studies with health humans

funcreporter

Automate RMarkdown Reporting :sparkles: :fire: :dancer:

hmp16sdata

16S rRNA Sequencing Data from the Human Microbiome Project

janitor

simple tools for data cleaning in R

kjh-vita

A simple LaTeX template that I use for my Vita and that someone asks me for once a month..

metagenomicsnake

MetagenomicSnake is a Snakemake workflow for analysis of metagenomic datasets from human microbiomes.

metasnk_data

Companion repository of MetaSnk. It contains reference data files and datasets for tests.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

omicsingularities

A set of recipies to build Singularity containers for analysis of omic data.

skiomemetadataretrieval

sradb

vtutorials

wakefield

Generate random data sets

whisperx

WhisperX: Automatic Speech Recognition with Word-level Timestamps (& Diarization)