miykael / nipype-beginner-s-guide Goto Github PK

Hi,

I am trying to run this script and am getting an error of reconall at line 41 since that is not defined anywhere in the script. Do I need to do something else to make the script work ?

Appreciate the effort put in creating these scripts.

Running OS X Version 10.11.4 with BASH version: 3.2.57(1)-release

It seems like the for loop on line 17 has a different behaviour depending on the BASH version you use:

for id in {01..10}

The output I get is:

0
1
2
3
4
5
6
7
8
9
10

There seems to be no padding zeros for the values that are single digit. This results in the script not being able to find any of the subject folders.

Changing line 17 to the following seemed to have fixed the issue for me:

for id in $(seq -w 1 10)

When I tried to run the script, it gives the error:

IOError: dot could not be found on host 1.0.0.127.in-addr.arpa
Interface CommandLine failed to run.

I have everything configured as stated in the website.