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Prediction of microbial interactions in complex communities
After successfully downloading the sequences the script DB_construction.sh fails with the following error:
Error: Invalid or corrupt jarfile /global/apps/OrtSuite/GPRKO.jar
The current version of download_kos.py is not downloading the sequences given a list of IDs.
Each fasta file corresponding to a KO is generated but their content is empty.
Command: download_kos -o output_dir/ -k kos.txt -v
Log.: log.txt
The user_input.csv file is not explained and I don't understand the columns in the example file. Can you explain the columns and how to create this table?
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