lattice-automation / primers Goto Github PK

opt_tm: float = 62.0
opt_gc: float = 0.5
opt_len: int = 22
penalty_tm: float = 1.0
penalty_gc: float = 3.0
penalty_len: float = 1.0
penalty_tm_diff: float = 1.0
penalty_dg: float = 2.0
penalty_offtarget: float = 20.0

optimal_tm: float = 62.0
optimal_gc: float = 0.5
optimal_len: int = 22
penalty_tm_delta: float = 1.0 # delta from optimal
penalty_gc_delta: float = 3.0
penalty_len_delta: float = 1.0
penalty_dg_delta: float = 2.0
penalty_offtarget: float = 20.0
penalty_pair_tm_delta: float = 1.0 # delta of tm between the pair's primers

wget https://pypi.io/packages/source/p/primers/primers-0.5.4.tar.gz
tar zxvf primer*
cd primers-0.5.4
ls

LICENSE
PKG-INFO
primers
primers.egg-info
README.md
setup.cfg
setup.py
tests

......
  Installing build dependencies ... done
  Running command Getting requirements to build wheel
  <string>:3: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
  Traceback (most recent call last):
    File "/tmp/primers-0.5.4/.venv/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
      main()
    File "/tmp/primers-0.5.4/.venv/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
      json_out['return_val'] = hook(**hook_input['kwargs'])
                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/tmp/primers-0.5.4/.venv/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
      return hook(config_settings)
             ^^^^^^^^^^^^^^^^^^^^^
    File "/tmp/pip-build-env-hoe006rw/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 325, in get_requires_for_build_wheel
      return self._get_build_requires(config_settings, requirements=['wheel'])
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/tmp/pip-build-env-hoe006rw/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 295, in _get_build_requires
      self.run_setup()
    File "/tmp/pip-build-env-hoe006rw/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 487, in run_setup
      super().run_setup(setup_script=setup_script)
    File "/tmp/pip-build-env-hoe006rw/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 311, in run_setup
      exec(code, locals())
    File "<string>", line 10, in <module>
  FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt'
  error: subprocess-exited-with-error
......