Kooplex hub
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###Portfolio
Portfolio projects are in '/_posts'
Images are in '/img/portfolio'
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Images are in '/img/about/'
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Team members and info are in '_config.yml'
Images are in '/img/team/'
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Az ujabb jupyter verzioban nem mukodik az api post, mivel a jupyter mar keres egy X-XSRFToken cookie-t is
http://blog.jupyter.org/2016/12/21/jupyter-notebook-4-3-1/
I cannot remove a forked project named "sharedtest2", after I click on "Yeah", nothing happens.
This image does not contain a full linux installation, important base programs are missing, which can come handy when scripting: eg.: bc, colrm, man
Is it possible to add these?
There is no owncloud folder for some projects shared (and maybe owned?) by me:
Pistinek kellett elmagyaraznia, mert magamtol nem jottem ra, hogyan mukodik a kattintos git pull.
A kis kituzos ikon amugy sem ezt juttatja eszembe, de a felirat azt raadasul azt mondja, hogy commitolhatok, vagy visszaallithatom korabbi allapotra. Csak azutan derul ki hogy pullolni is lehet, miutan rakattintasz es eszreveszed, hogy amugy van egy 3 elemu menu felul.
Ezt egyertelmuve kene tenni, mert masok sem fogjak megtalalni. Lehetne egy source controllra jelemzo ikon peldaul (https://thenounproject.com/term/source-control/103766/) , es a popup szovegben le kene irni, hogy pullolni is lehet.
Koszi
in mysql
(1406, "Data too long for column 'courseid' at row 1")
It would be nice to have a correct all button, when you are the only teacher on the class.
Remélem ezt akkor megkapjátok.
ha elindul a jupyterhub, akkor a "Running" alatt nem notebookok, hanem konyvtarak jelennek meg, amiket nem lehet shutdownolni, pl. projects/jeges/szamprob . Ez akkor is a listan marad, ha a kontenert leallitom. Lehet, hogy browser bug, de meg soha semelyik mas jupyternel nem tapasztaltam
az en sajat (csabai) regi projektjeim nem indulnak, a revert se megy es nincs gomb se, hogy toroljem, ilyen hibat dob:
NotFound at /hub/notebooks/open
404 Client Error: Not Found ("b'{"message":"No such image: roject:latest"}'")
Request Method: GET
Request URL: http://172.20.0.16/hub/notebooks/open?project_owner=csabai&project_name=csabaiProject1&repo=csabai/csabaiProject1&is_forked=False&description=s%20project1
Csak ugy a jupyterben nem mertem kitorolni a foldereket. BTW mi van, ha ott kitorlom, a hub tudomast szerez rola?
Changing password is possible from now on, BUT the password shows up in gitlab logs like:
POST /gitlab/api/v3/session?password=alma&login=jegesm
?? How to make it disappear?
on kooplex-edu there's a typo when you go into the assignment pane
It should say assign.
I can remove files in /share even though they are owned not by me.
Is it a bug or a feature?
Sziasztok!
Ha jól látom, a dashboard publikálásánál a dashboard címében megjelenik az aktuális dátum+idő. Tudom, hogy erről már volt szó, de hogy is van ez a dashboard frissítés dolog?
Nekem az lenne az ideális, ha tudnám anélkül frissíteni (vagyis redeploy-olni) a dashboardjaimat, hogy az URL megváltozna, hogy ne kelljen mindig az e-mailekből kihasználni az aktuális címet. Preferáltan az lenne a legjobb, ha semmilyen dátum nem is szerepelne az URL-ben. Értem, hogy a verziókövetés miatt ez nem jó, de nem arról volt szó, hogy lesz egy "mindig ez a legfrissebb" dashboard valami univerzális címmel és emellett el lesznek valahogy tárolva a régebbiek, más néven?
Köszi!
description? labels? tags? etc?
There is no zip/unzip command in the dev kernel.
Unicode characters cause error in published notebooks. Conversion runs, but after deployment the page gives error:
(the converted notebook was this: https://kooplex.vo.elte.hu/gitlab/icsabai/nvkppanel1/blob/master/project1/project1.ipynb)
| Request Method: | GET |
|---|---|
| http://kooplex3/hub/worksheetsopen?report_id=14 | |
| 1.9 | |
| UnicodeDecodeError | |
| 'ascii' codec can't decode byte 0xc3 in position 249252: ordinal not in range(128) | |
| /usr/lib/python3.5/encodings/ascii.py in decode, line 26 | |
| /usr/bin/python3 | |
| 3.5.2 | |
| ['/usr/local/lib/python3.5/dist-packages/git/ext/gitdb', '/kooplexhub/kooplexhub', '/usr/lib/python35.zip', '/usr/lib/python3.5', '/usr/lib/python3.5/plat-x86_64-linux-gnu', '/usr/lib/python3.5/lib-dynload', '/usr/local/lib/python3.5/dist-packages', '/usr/lib/python3/dist-packages', '/usr/local/lib/python3.5/dist-packages/gitdb/ext/smmap'] | |
| Sun, 16 Jul 2017 12:21:17 +0000 |
Unicode error hint
The string that could not be encoded/decoded was: p53 g��n sz
...
In the kooplex-dev image there is no pyton2.7 kernel by default.
I have forked a public project (elte: pallag/methylation), started it and cannot stop. For some reason the system thinks I want to delete, not stop.
This is the Stop button URL:
https://compare.vo.elte.hu/hub/notebooks/delete?notebook_id=aa776da9-e91f-47ff-b2ed-2ac79dcbc077&session_id=2e316a92-6182-428d-9f70-765d16a95586
And this is the error message:
APIError at /hub/notebooks/delete
409 Client Error: Conflict ("b'{"message":"You cannot remove a running container e648472602f12b1fc89e78863ff6ae7187daedc8e48a717ccde70ce98d1fdfd3. Stop the container before attempting removal or use -f"}'")
Request Method: GET
Request URL: http://kooplex1/hub/notebooks/delete?notebook_id=aa776da9-e91f-47ff-b2ed-2ac79dcbc077&session_id=2e316a92-6182-428d-9f70-765d16a95586
Django Version: 1.9
Exception Type: APIError
Exception Value:
409 Client Error: Conflict ("b'{"message":"You cannot remove a running container e648472602f12b1fc89e78863ff6ae7187daedc8e48a717ccde70ce98d1fdfd3. Stop the container before attempting removal or use -f"}'")
Exception Location: /usr/local/lib/python3.5/dist-packages/docker/client.py in _raise_for_status, line 174
Python Executable: /usr/bin/python3
Python Version: 3.5.2
Python Path:
['/usr/local/lib/python3.5/dist-packages/git/ext/gitdb',
'/kooplexhub/kooplexhub',
'/usr/lib/python35.zip',
'/usr/lib/python3.5',
'/usr/lib/python3.5/plat-x86_64-linux-gnu',
'/usr/lib/python3.5/lib-dynload',
'/usr/local/lib/python3.5/dist-packages',
'/usr/lib/python3/dist-packages',
'/usr/local/lib/python3.5/dist-packages/gitdb/ext/smmap']
Server time: Tue, 6 Jun 2017 14:58:21 -0500
A terminálok /home-ba nyílnak a /home/$USER helyett..
Solved: With gitlabadmin try to add the user again and remove (and add again?)
KeyError at /hub/notebooks
-1
Request Method: GET
Request URL: http://wignercloud.compare-europe.hu:8887/hub/notebooks
Django Version: 1.9
Exception Type: KeyError
Exception Value:
-1
Exception Location: /usr/local/lib/python3.5/dist-packages/django/template/defaultfilters.py in last, line 575
Python Executable: /usr/bin/python3
Python Version: 3.5.2
Python Path:
['/usr/local/lib/python3.5/dist-packages/git/ext/gitdb',
'/kooplexhub/kooplexhub',
'/usr/lib/python35.zip',
'/usr/lib/python3.5',
'/usr/lib/python3.5/plat-x86_64-linux-gnu',
'/usr/lib/python3.5/lib-dynload',
'/usr/local/lib/python3.5/dist-packages',
'/usr/lib/python3/dist-packages',
'/usr/local/lib/python3.5/dist-packages/gitdb/ext/smmap']
Server time: Mon, 10 Apr 2017 11:25:06 -0500
Az nem baj, hogy jelszo nelkul be lehet lepni a notebookhoz ha valaki ismeri az url-t?
pl: https://kooplex.vo.elte.hu/notebook/dribli/[valami uid]/notebooks/git/Untitled.ipynb
Ha peldaul Laci demozza epp a feluletet a compare eves meetingen, akkor valaki lemasolhatja az url-t es akkor jelszo nelkul belephet es elkezdhet bitcoint vagy ethereumot banyaszni ha unalmas az eloadas. (Skype megosztasnal ugyanigy bajos lehet.)
Valoszinuleg jo lenne mindent auth moge tenni, nem?
Feature request (kooplex-edu):
I would need a quick overview of assignments in one folder, without having to collect and then reassign (reassignment removes them again). Preferably, if only one .ipynb is present in the students assignment folder, copy that to a single folder, with the students name prepended and also convert it to html for quick preview (jupyter nbconvert --execute --to html notebook.ipynb.)
After updating notebook, cannot refresh dashboard. (Not even the Markdown cells change.) Though there is no error message when publishing.
maybe different color?
as of the current implementation if both remote and local changes are present user is not told about a possible git conflict. yet, there are no helpers shown to handle conflict or give advise
Importance: low priority
Since kooplex has been restarted, I cannot save notebooks as before:
Despite all this, sometimes it still manages to get saved, but in a rather random manner (I don't know when and how, I just see the result when I open the notebook again).
Is it an issue concerning only me?
This bug is also observable using the siesta-qe image.
In lab view, in the notebooks, if I click into a new cell, the keys cause erratic effects, until Shift-insert is pressed. Then I can write into the cell as normal.
1, Jo lenne ha 2x kene beutni az uj jelszot, jelszo valtasnal. Ez mindenhol igy szokott lenni, hogy megelozd a hibat.
2, Ha mar van password change, akkor kellene hogy legyen password reset is, ne kelljen minden alkalommal az adminokkal emailezgetni ha elfelejti valaki a jelszot.
Safarival nem tudok notebookozni. Azt mondja hogy connecting to kernel naracssargan azt ennyi. Firefox-al megy.
Ha jol tudom ez a self-signed ervenytelen tanusitvany miatt van.
jupyter/notebook#1744
" Safari does not allow websocket connections on https if the certificate is 'untrusted' "
Ha csak valahogy ervenyesititek akkor megoldodik.
Nem erdemes elhanyagolni, mert csak a mac-ek baja, mert szerintem rengeteg compare partner macezik.
Kosz
Dezso
I have 2 projects owned by icsabai: csabaibio, germlinesignature I tried to delete them, nothing happens.
Migrated from kooplex-config.
After having done commit all and push, the date of the last commit on the Notebooks page did not change.
The checkpoint is created though, because by choosing Revert, I can see all of my commits.
Van egy projekt aminek a projekt settingset nem engedi megnyitni a fenti hibaval, pedig nem is fut eppen.
Csatolok egy screenshotot.
Feature request for kooplex-edu:
A course might run under several codes, and it would be great to be able to handle them in once instance. E.g. for canvas.elte.hu, you can (in neptun) define which courses should get one instance of the canvas e-learning course which makes handling multiple classes easy.
Additional super option would be to somehow manually add people to the course (e.g. PhD student want to attend but can't or doesn't want to actually take the course officially).
In the "new" interface independently if the user owns a project or access it as guest there is the settings "wrench" button, but it is functional only for the owner. It would be better to make it evident (faded color, or similar), that it is working only for the owner.
Cannot open existing dashboard.
502 Bad Gateway
On clicking reports on the kooplex homepage, following message appears insted of the list of reports:
AttributeError at /hub/worksheets
'NoneType' object has no attribute 'ports'
Request Method: GET
Request URL: http://kooplex1/hub/worksheets
Django Version: 1.9
Exception Type: AttributeError
Exception Value:
'NoneType' object has no attribute 'ports'
Exception Location: /kooplexhub/kooplexhub/kooplex/lib/dashboards.py in list_dashboards, line 152
Python Executable: /usr/bin/python3
Python Version: 3.5.2
Python Path:
['/usr/local/lib/python3.5/dist-packages/git/ext/gitdb',
'/kooplexhub/kooplexhub',
'/usr/lib/python35.zip',
'/usr/lib/python3.5',
'/usr/lib/python3.5/plat-x86_64-linux-gnu',
'/usr/lib/python3.5/lib-dynload',
'/usr/local/lib/python3.5/dist-packages',
'/usr/lib/python3/dist-packages',
'/usr/local/lib/python3.5/dist-packages/gitdb/ext/smmap']
Server time: Wed, 31 May 2017 05:21:30 -0500
Environment:
Request Method: GET
Request URL: http://kooplex1/hub/worksheets
Django Version: 1.9
Python Version: 3.5.2
Installed Applications:
('django.contrib.auth',
'django.contrib.contenttypes',
'django.contrib.sessions',
'django.contrib.sites',
'django.contrib.messages',
'django.contrib.staticfiles',
'django.contrib.admin',
'django.contrib.admindocs',
'kooplex.hub.apps.HubConfig')
Installed Middleware:
('django.middleware.common.CommonMiddleware',
'django.contrib.sessions.middleware.SessionMiddleware',
'django.middleware.csrf.CsrfViewMiddleware',
'django.contrib.auth.middleware.AuthenticationMiddleware',
'django.contrib.messages.middleware.MessageMiddleware',
'threadlocals.middleware.ThreadLocalMiddleware')
Traceback:
File "/usr/local/lib/python3.5/dist-packages/django/core/handlers/base.py" in get_response
149. response = self.process_exception_by_middleware(e, request)
File "/usr/local/lib/python3.5/dist-packages/django/core/handlers/base.py" in get_response
147. response = wrapped_callback(request, *callback_args, **callback_kwargs)
File "/kooplexhub/kooplexhub/kooplex/hub/views/worksheets.py" in worksheets
27. list_of_dashboards = D.list_dashboards(request)
File "/kooplexhub/kooplexhub/kooplex/lib/dashboards.py" in list_dashboards
152. ports=dashboard_container.ports
Exception Type: AttributeError at /hub/worksheets
Exception Value: 'NoneType' object has no attribute 'ports'
The below error message shows up.
I don't understand, why it searches in icsabai.
FileNotFoundError at /hub/worksheets/unpublish
[Errno 2] No such file or directory: '/srv/kooplex/mnt_kooplex/compare/dashboards/dev/icsabai-tourist-scaling-singapore/country_tourist_scaling.ipynb'
Request Method: GET
Request URL: http://kooplex1/hub/worksheets/unpublish?project_owner=bokanyi&project_name=tourist-scaling-singapore&project_id=94&file=country_tourist_scaling&image_suffix=dev
Django Version: 1.9
Exception Type: FileNotFoundError
Exception Value:
[Errno 2] No such file or directory: '/srv/kooplex/mnt_kooplex/compare/dashboards/dev/icsabai-tourist-scaling-singapore/country_tourist_scaling.ipynb'
Exception Location: /kooplexhub/kooplexhub/kooplex/lib/dashboards.py in unpublish, line 260
Python Executable: /usr/bin/python3
Python Version: 3.5.2
Python Path:
['/usr/local/lib/python3.5/dist-packages/git/ext/gitdb',
'/kooplexhub/kooplexhub',
'/usr/lib/python35.zip',
'/usr/lib/python3.5',
'/usr/lib/python3.5/plat-x86_64-linux-gnu',
'/usr/lib/python3.5/lib-dynload',
'/usr/local/lib/python3.5/dist-packages',
'/usr/lib/python3/dist-packages',
'/usr/local/lib/python3.5/dist-packages/gitdb/ext/smmap']
Server time: Thu, 11 May 2017 05:04:36 -0500
This is very time consuming. Why like this?
in start-notebook.sh - module/notebook
We will change permissions in images to /opt/conda so that it is writable to all
ha egy wiki oldalon szeretném hivatkozni az éppen aktuálisan futó container egyik notebook-ját, akkor az url-be hogyan tudom betenni a container egyedi azonosító kódját?
pl. egy ilyet:
https://kooplex.vo.elte.hu/notebook/[VIEWING_USERID]/[RUNNING_CONTAINER_ID]/notebooks/share/methyl_PANCAN12.ipynb
a gitlab is meg tudja jeleníteni a notebook-ot, de se az ábrák, se a nagy táblázatok nincsenek jól renderelve. Viszont a notebook-ot container-ben nézve szépen látszik minden, és a megosztott projektekben pontosan azt láthatnánk, amit a kód írója is lát
Symptoms:
I open a project as a collaborator (I am not the owner) and start notebooks. On the "Running" tab I see them running, but the "Shutdown" button is not working. On the "Files" tab, after checking the checkbox for corresponding the notebook, the shutdown button at the top works.
Mouseover labels for buttons (settings, container stop, etc) would help. Now I am not sure if clicking a big red cross will just stop or delete.
The "old" kooplex https://compare.vo.elte.hu/hub/ gives 502 Bad Gateway error.
can't see any new files created in jupyter containers. BUT the same method was used with the tmp_hub and there it works perfectly ?!
Without login, "Public reports" (https://compare.vo.elte.hu/hub/worksheets) gives error:
KeyError at /hub/worksheets
'username'
Request Method: GET
Request URL: http://kooplex1/hub/worksheets
Django Version: 1.9
Exception Type: KeyError
Exception Value:
'username'
Exception Location: /kooplexhub/kooplexhub/kooplex/lib/dashboards.py in list_dashboards, line 162
Python Executable: /usr/bin/python3
Python Version: 3.5.2
Python Path:
['/usr/local/lib/python3.5/dist-packages/git/ext/gitdb',
'/kooplexhub/kooplexhub',
'/usr/lib/python35.zip',
'/usr/lib/python3.5',
'/usr/lib/python3.5/plat-x86_64-linux-gnu',
'/usr/lib/python3.5/lib-dynload',
'/usr/local/lib/python3.5/dist-packages',
'/usr/lib/python3/dist-packages',
'/usr/local/lib/python3.5/dist-packages/gitdb/ext/smmap']
Server time: Fri, 5 May 2017 07:45:31 -0500
In the default text editor, it is not possible to write except to the beginning of the line. At any position if is clicked it is added to the beginning of the line.
Is it a bug or a feature?
I was about to create users for the Quantum Technology projects called EQuUs, when I encountered this bug. It seems like that in LDAP user is created but when calls are made for attributes it raises a 0 Exception and the error comes randomly from different points of the code in the ldap module
Can not sart shared project.
Environment:
Request Method: GET
Request URL: http://kooplex3/hub/notebooksstart_container?project_id=87
Django Version: 1.9
Python Version: 3.5.2
Installed Applications:
('django.contrib.auth',
'django.contrib.contenttypes',
'django.contrib.sessions',
'django.contrib.sites',
'django.contrib.messages',
'django.contrib.staticfiles',
'kooplex.hub.apps.HubConfig',
'kooplex.hub.templatetags',
'django.contrib.admin',
'django.contrib.admindocs')
Installed Middleware:
('django.middleware.common.CommonMiddleware',
'django.contrib.sessions.middleware.SessionMiddleware',
'django.middleware.csrf.CsrfViewMiddleware',
'django.contrib.auth.middleware.AuthenticationMiddleware',
'django.contrib.messages.middleware.MessageMiddleware',
'threadlocals.middleware.ThreadLocalMiddleware')
Traceback:
File "/usr/local/lib/python3.5/dist-packages/django/core/handlers/base.py" in get_response
149. response = self.process_exception_by_middleware(e, request)
File "/usr/local/lib/python3.5/dist-packages/django/core/handlers/base.py" in get_response
147. response = wrapped_callback(request, *callback_args, **callback_kwargs)
File "/kooplexhub/kooplexhub/kooplex/hub/views/notebooks.py" in container_start
239. notebook = spawner.ensure_notebook_running()
File "/kooplexhub/kooplexhub/kooplex/lib/spawner.py" in ensure_notebook_running
258. notebook = self.make_notebook()
File "/kooplexhub/kooplexhub/kooplex/lib/spawner.py" in make_notebook
192. U = ldp.get_user(self.username)
File "/kooplexhub/kooplexhub/kooplex/lib/ldap.py" in get_user
178. raise LdapException('no such user')
Exception Type: LdapException at /hub/notebooksstart_container
Exception Value: no such user
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