khp-informatics Goto Github PK

git-tutorial

A sandbox repo for the git tutorial for this quick intro to Git

hackhour

Files for each hackhour topic... fork, beer, pizza

hefceref

hierarchicalclusteringals

Code used to replicate the clustering, cell composition and phenotype analysis in the hierarchical clustering paper.

hipdynamics

hipdynamicsr

HipDynamics is a data analytics middleware that allows you to slice multi-dimensional data sets according to a pre-defined context.

httpd-php7-ssl-docker

extending the base httpd server with php7 and openssl

illumina-array-protocols

processing illumina SNP arrays

irodi

Utility scripts for irods e.g. iRODS Bulk metadata ingestion

k8sworkflow

Workflows ontop of Kubernettes

knowledgebase

mimic-vital-extraction-sql

Extracting all vitals, labs, comorbidities and ventillation info from MIMIC-III

mimir-docker

mnd-datamanagementanalysis-system

Main repository of our data management and analysis system for ALS research

mockesdata

a simple python script for generating mock data to ElasticSearch index

napeasy

identifying psychometric and neuroatonomy relations in publications

ngs-qc-report

ngs_pipelines

Nextflow-based pipelines for typical NGS processing tasks

ngs_workshop_advanced_bioinformatics

ngseasy

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

ngspipeline

Our NGS Pipeline using Nextflow

ngsutils

Tools for next-generation sequencing analysis

nlp-embedding-visualisation

osticket-docker

outmoded_bonsai

A mono-based framework for loading Illumina BeadStudio/GenomeStudio modules on non-windows systems. This effort is not endorsed by nor affiliated with Illumina. The project name is an anagram for "Mono BeadStudio".

patient-flow-simulator

Manage a simulated hospital to understand patient flow bottlenecks

patient-flow-simulator.

This only exists to redirect to the actual repo: https://github.com/KHP-Informatics/patient-flow-simulator

patient-timeline

platypus

Platypus Variant Caller

primer_designer

Primer design helpers for the Buckley lab