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View Code? Open in Web Editor NEWMassively parallel Monte Carlo diffusion MR simulator written in Python.
Home Page: https://disimpy.readthedocs.io/
License: MIT License
Massively parallel Monte Carlo diffusion MR simulator written in Python.
Home Page: https://disimpy.readthedocs.io/
License: MIT License
Hi,
I want to know if it is possible to define multiple substrates in a single simulation ? ( say having multiple spheres and ellipsoids in the same simulation environment)
Dear disimpy creators/collaborators,
I'm trying to simulate a geometry that was originally run in Camino, however, when I try to import the .ply using meshio, I get this geometry:
I then converted the .ply into .stl file using an free online tool, which apparently fixed the problem:
However, when I simulate it, I get something close to free water diffusion, even though I set the structure as periodic.
Please let me know if you have any recommendations or suggestions.
Thanks,
T
Hi,
I set 'substrate = mesh', and set 'extra = true', but how to set the separation size?
Running Sphinx v7.2.6
making output directory... done
Traceback (most recent call last):
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/pygments/styles/__init__.py", line 45, in get_style_by_name
mod = __import__(mod, None, None, [cls])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'pygments.styles.stata'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/sphinx/cmd/build.py", line 293, in build_main
app = Sphinx(args.sourcedir, args.confdir, args.outputdir,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/sphinx/application.py", line 272, in __init__
self._init_builder()
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/sphinx/application.py", line 342, in _init_builder
self.builder.init()
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/sphinx/builders/html/__init__.py", line 220, in init
self.init_highlighter()
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/sphinx/builders/html/__init__.py", line 283, in init_highlighter
self.highlighter = PygmentsBridge('html', style)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/sphinx/highlighting.py", line 99, in __init__
style = self.get_style(stylename)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/sphinx/highlighting.py", line 116, in get_style
return get_style_by_name(stylename)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/pygments/styles/__init__.py", line 47, in get_style_by_name
raise ClassNotFound("Could not find style module %r" % mod +
pygments.util.ClassNotFound: Could not find style module 'pygments.styles.stata'.
Exception occurred:
File "/home/docs/checkouts/readthedocs.org/user_builds/disimpy/envs/latest/lib/python3.11/site-packages/pygments/styles/__init__.py", line 47, in get_style_by_name
raise ClassNotFound("Could not find style module %r" % mod +
pygments.util.ClassNotFound: Could not find style module 'pygments.styles.stata'.
The full traceback has been saved in /tmp/sphinx-err-upzt0duf.log, if you want to report the issue to the developers.
Please also report this if it was a user error, so that a better error message can be provided next time.
A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!```
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