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airflow

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

airflow-fs

Composable filesystem hooks and operators for Apache Airflow.

airflow-guides

Guides to get up and running with Airflow

airflow-training-skeleton

Skeleton project for Apache Airflow training participants to work on.

azureml-package-example

Example of using Python packages with Azure ML.

bioconda-recipes

Conda recipes for the bioconda channel.

cimpl

Common Insertion Site Mapping Platform implemented as an R package for statistical analysis of retroviral insertional mutagenesis screens.

code-breakfast-productionizing

code-breakfast-vertex-ai

Code breakfast focusing on Vertex AI.

conda-recipes

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

cookiecutter-pypackage

Cookiecutter template for a Python package.

cookiecutter-snakemake-workflow

A cookiecutter template for Snakemake workflows

custom-images

Tools for creating Dataproc custom images

dacite-config

Helpers for creating typed, IDE-friendly configs in Python using dataclasses and `dacite`.

de-python-hackathon

docker-airflow-codeserver

Docker compose setup with both Airflow + code-server.

genemap

Python library + command line tool for mapping gene ids between different types and species.

geneviz

Library for visualising genomic features in Python.

genopandas

Query and manipulate genomic dataframes in Python.

heos

Python library for interacting with HEOS multi-room speakers.

heos-remote

Control HEOS-powered speakers using a physical (bluetooth) remote.

homebrew-tap

ilc-sb-screen

Jupyter notebooks and code accompanying our paper "Insertional mutagenesis identifies drivers of a novel oncogenic pathway in invasive lobular breast carcinoma" in Nature Genetics (2017).

imfusion-analyses

Jupyter notebooks and code accompanying our paper "Identifying transposon insertions and their effects from RNA-sequencing data" in Nucleic Acids Research (2017, in press).

intervaltree

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

jupyterhub

jupyterlab-vscode

Docker image with JupyterLab + VSCode Server for browser-based editing.

minikube

Run Kubernetes locally

multiscale_segmentation