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ngs-tk

A collection of python functions/utilities useful for NGS analyses.

openvscode-python

Small example of a Docker container that clones a Python repo and exposes it in openvscode-server.

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

penguins

pipelines-python-django

Sample Python Django application for Azure Pipelines docs

production-ready-ml

pybiomart

A simple pythonic interface to biomart.

pyfaidx

pyfaidx: efficient pythonic random access to fasta subsequences

pyim

Tool for identifying transposon insertions from targeted DNA-sequencing data.

randomforest-matlab

Fork of randomforest-matlab project by Abhishek Jaiantilal.

randomforest-wrapper-matlab

rubic

RUBIC detects recurrent copy number aberrations.

scikit-learn

scikit-learn: machine learning in Python

seaborn

Statistical data visualization using matplotlib

snakemake-cnvseq

Snakemake workflow for processing CNV-seq data.

snakemake-exome

Snakemake workflow for processing exome data.

snakemake-pdx-exome

Snakemake workflow for processing pdx exome data.

snakemake-rnaseq

RNA-seq workflow for Snakemake based on STAR and featureCounts.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

vertex-workbench-vscode

Custom VM image for Vertex Workbench with OpenVSCode, Pyenv and Poetry.

whirl

Fast iterative local development and testing of Apache Airflow workflows