jksr / coolbox

Jupyter notebook based genomic data visualization toolkit.

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Flexible, user-friendly genomic data visualization toolkit.

Highlights:

• Multi-omics data interactively visualization.
• User-friendly API (ggplot2-like Python EDSL) and CLI.
• Show within Jupyter notebook.
• Ease to fetch data and in cooperation with other Python package.
• Ease to implement/add custom track and integrate into CoolBox.

More details please read the documentation. Interactively online demo: binder

Develop

See CONTRIBUTING.md

Citation

@article{xu2021coolbox,
  title={CoolBox: A flexible toolkit for visual analysis of genomics data},
  author={Xu, Weize and Zhong, Quan and Lin, Da and Zuo, Ya and Dai, Jinxia and Li, Guoliang and Cao, Gang},
  journal={BMC bioinformatics},
  volume={22},
  number={1},
  pages={1--9},
  year={2021},
  publisher={Springer}
}

Thanks

• pyGenomeTracks, CoolBox's plot system is fork from it.

Contributors

This project exists thanks to all the people who contribute.