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awesome-expression-browser

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

bioconda-recipes

Conda recipes for the bioconda channel.

bluewhalecore

bplda

Latent Dirichlet allocation fitted via loopy belief propagation

cistopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

cookiecutter-beamer

Template for beamer presentation

cookiecutter-snakemake-analysis-pipeline

A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.

coolbox

Jupyter notebook based genomic data visualization toolkit.

fastbook

The fastai book, published as Jupyter Notebooks

galaxytools

:microscope::books: Galaxy Tool wrappers

genomeutils

hmmlearn

Hidden Markov Models in Python, with scikit-learn like API

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

janggu_usecases

Examples for deep learning in genomics using Janggu

loompy

Python implementation of the Loom file format - http://loompy.org

mdist

R package for determining motif enrichment in DNA sequences

mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC-III database

motifcounter

R package for identifying motif matches and motif enrichment in DNA sequences

nmvae-experiments

Benchmarking computational single cell ATAC-seq methods

pytorch-skipgram

Implementing Skip-gram Negative Sampling with pytorch

snaptools

A module for working with snap files in Python

spreedictorldopaparkinson

This project was used for participating in the Subchallenges 2.1-2.3 of the Parkinson's disease digital biomarker DREAM challenge

spreedictormpowerparkinson

This project was used for participating in the MPower Subchallenge of the Parkinson's disease digital biomarker DREAM challenge

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

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