Comments (4)
Thanks for your feedback.
The default threshold is a simple setting for a quick start. It doesn't mean that we recommend it as a gold standard. This parameter was designed as a user-defined one because the best choice is not fixed for all applications. It depends on your own input data.
Jialu
from mitefinder.
Thanks for your feedback. The default threshold is a simple setting for a quick start. It doesn't mean that we recommend it as a gold standard. This parameter was designed as a user-defined one because the best choice is not fixed for all applications. It depends on your own input data. Jialu
Thanks for your explantion! And I have some questions about the results. In the descriprion you said m1 means the TIR is the imperfect inverted repeats and 4138 is the mismatch base, I would infer the m0 label representing a perfect inverted repeats, so what does the number in front of m0 mean? What if there are more than one bases mismatching? In other words, may I treat the sequences labelled with m0 as high confidence ones?
from mitefinder.
Sorry for the confusion. Here, m1 means that there is only one mismatch in the TIR, and the mismatch base is at 4138. The m0 label means that there is no mismatch in TIR (a perfect inverted repeat). If there is no mismatch, you can just ignore the number in front of m0 (because it might be the start position of this mite or something else. Sorry, I forgot the exact meaning). So you are right. Normally, we treated the one with perfect TIR as one mite with a high confidence.
from mitefinder.
Many thanks for your timely reply, it is very helpful!
Best~
from mitefinder.
Related Issues (7)
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from mitefinder.