how to parse the output result about mitefinder

[nwpuzhengyan]

Yeah, it is easy to change the function of output. Do you mean to change the result just like this way?
mite|28|586|595|816|825|t3|591|m1|ave_score:0.611172
changed to
chr28 MiteFinder Mite 586 825 ave_score:0.611172 + . TSD=583,585,826,828

[nwpuzhengyan]

The description of the header line is just like this：
mite|28|586|595|816|825|t3|591|m1|ave_score:0.611172
The 28 means the serial number of chromosome and 586,595,816,825 is the position of TIR. t3 means the length of TSD is 3. If you have any other questions, please contact me by [email protected]. Thank you.

[aubombarely]

Hello,

First of all, nice tool.

In the example that you mention. What 591 and m1 means? Is the 591 the position of the TSD? Would be possible to get the TSD sequence in the header? Also could you add this description to the README file? Thank so much.

Best regards

Aureliano

[nwpuzhengyan]

Thank you for your question, t3 means the length of TSD is 3 and m1 means the TIR is an imperfect inverted repeats. The 591 is the position of mismatch base. If you have any other questions, please contact me by [email protected]. Thank you again.

[aubombarely]

Thank you. I am using your tool for genome annotation.
Would be possible to get an extra function to get a GFF file with the annotation specifying where the TSD and the TID regions are?
Best regards
Aureliano