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License: Apache License 2.0
Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
License: Apache License 2.0
The old Google client libraries (google-api-python-client
) are now in maintenance only mode. They are superseded by google-cloud-python
.
Most of the notebooks need to be updated to be kept up-to-date.
On https://github.com/isb-cgc/examples-Python/blob/master/notebooks/Creating%20TCGA%20cohorts%20--%20part%201.ipynb, there is a call to
%bigquery schema --table isb-cgc:tcga_201607_beta.Clinical_data
which displays no schema details underneath. This is an issue with the rendering code relying on JavaScript and github blocking JavaScript.
I just filed an issue there ("%bigquery schema --table" produces no visible output on github)[https://github.com/googledatalab/pydatalab/issues/184] which includes some python code to replace "bigquery schema" call. This can be used to work around the pydatalab library issue.
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