imi-bigpicture / opentile Goto Github PK

tifffile<2022.0.0,>=2021.6.14 
imagecodecs<2022.0.0,>=2021.8.26

============================================================================== FAILURES ==============================================================================
______________________________________________________________________ test_dependent_opentile _______________________________________________________________________

    @pytest.mark.skipif(SKIP_PRIVATE or SKIP_LARGE or SKIP_WIN, reason=REASON)
    def test_dependent_opentile():
        """Test opentile package."""
        # https://github.com/imi-bigpicture/opentile
        try:
            from hashlib import md5
            import turbojpeg
            from opentile.geometry import Point
            from opentile.ndpi_tiler import NdpiTiler
        except ImportError:
            pytest.skip('opentile missing')

        fname = private_file('HamamatsuNDPI/CMU-1.ndpi')

        turbo_path = os.path.join(
            os.path.dirname(turbojpeg.__file__), 'turbojpeg.dll'
        )

        with NdpiTiler(
            fname,
            512,
            turbo_path=turbo_path,
        ) as tiler:
            # from example
>           tile = tiler.get_tile(0, 0, 0, (0, 0))

tests\test_tifffile.py:16096:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
X:\Python311\Lib\site-packages\opentile\common.py:521: in get_tile
    tiled_page = self.get_page(series, level, page)
X:\Python311\Lib\site-packages\opentile\ndpi_tiler.py:987: in get_page
    ndpi_page = self._create_page(series, level, page)
X:\Python311\Lib\site-packages\opentile\ndpi_tiler.py:1078: in _create_page
    return NdpiStripedPage(
X:\Python311\Lib\site-packages\opentile\ndpi_tiler.py:776: in __init__
    super().__init__(page, fh, base_shape, tile_size, jpeg, frame_cache)
X:\Python311\Lib\site-packages\opentile\ndpi_tiler.py:459: in __init__
    super().__init__(page, fh, jpeg)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = <[AttributeError("'NdpiStripedPage' object has no attribute '_base_shape'") raised in repr()] NdpiStripedPage object at 0x20e988e0b10>
page = <tifffile.TiffPage 0 @184062235>, fh = <tifffile.FileHandle 'CMU-1.ndpi'>, jpeg = <opentile.jpeg.Jpeg object at 0x0000020E98927510>

    def __init__(
        self,
        page: TiffPage,
        fh: FileHandle,
        jpeg: Jpeg
    ):
        """Ndpi page that should not be tiled (e.g. overview or label).
        Image data is assumed to be jpeg.

        Parameters
        ----------
        page: TiffPage
            TiffPage defining the page.
        fh: FileHandle
            Filehandler to read data from.
        jpeg: Jpeg
            Jpeg instance to use.
        """
        super().__init__(page, fh)
        if self.compression != 'COMPRESSION.JPEG':
>           raise NotImplementedError(
                f'{self.compression} is unsupported for ndpi '
                '(Only jpeg is supported)'
            )
E           NotImplementedError: 7 is unsupported for ndpi (Only jpeg is supported)

X:\Python311\Lib\site-packages\opentile\ndpi_tiler.py:319: NotImplementedError

Python 3.11.0b3 (main, Jun  1 2022, 13:29:14) [MSC v.1932 64 bit (AMD64)] on win32
Type "help", "copyright", "credits" or "license" for more information.
>>>
>>> from tifffile.tifffile import COMPRESSION
>>> str(COMPRESSION.JPEG)
'7'

Python 3.10.4 (tags/v3.10.4:9d38120, Mar 23 2022, 23:13:41) [MSC v.1929 64 bit (AMD64)] on win32
Type "help", "copyright", "credits" or "license" for more information.
>>> from tifffile.tifffile import COMPRESSION
>>> str(COMPRESSION.JPEG)
'COMPRESSION.JPEG'