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Very high memory usage in SGE about hap.py HOT 3 CLOSED

illumina avatar illumina commented on August 24, 2024
Very high memory usage in SGE

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Comments (3)

pkrusche avatar pkrusche commented on August 24, 2024

When not told otherwise, hap.py guesses the number of threads from the processors physically available, which can increase memory usage. SGE may allocate you 4 processors on a shared node, but the node might have more which hap.py may be trying to use. Can you try passing --threads=4 to see if this fixes your issue?

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wangguangya60 avatar wangguangya60 commented on August 24, 2024

Hi, pkrusche. Yes, that works. Thanks a lot.

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pkrusche avatar pkrusche commented on August 24, 2024

Happy to help!

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