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View Code? Open in Web Editor NEWIntrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidomics, exposomics, and environmental studies.
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IDSL.IPA computations successful but workflow stopped due to an error
Hello,
I was able to successfully run IDSL.IPA (I believe so anyhow) on my 12 mzML files, however the command ended due to an error. Here's the end of the log
Completed gap-filling!
---------------------------------------------------------------------------------------------------
---------------------------------------------------------------------------------------------------
The required processing time was `1.21609768807888 hours`
2023-03-23 22:33:11 Etc/UTC
Completed IDSL.IPA computations successfully!
===================================================================================================
Error in base::try(ms1, silent = TRUE) : object 'ms1' not found
Stopped IDSL.IPA workflow!
Should the error be disregarded?
Also, which output in the peak_alignment folder should be used as the peak table? peak_R13C_gapfilled.csv?
Thank you!
Switch 'loess' function to 'simpleLoess'
This change may speed up the chromatography analysis module since it depends on the 'loess' function of R.
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