a1aks Goto Github PK
Name: Akshay
Type: User
Company: University of Sheffield
Location: Sheffield
Blog: https://www.linkedin.com/in/akshay-bhat-b2203234/?originalSubdomain=in
Akshay's Projects
activerecord-sqlserver-adapter
SQL Server Adapter For Rails
activerecord-sqlserver-adapter-schemas
Adds schema support to activerecord-sqlserver-adapter.
amatch
Approximate String Matching library
ascat
ASCAT copy number R package
ascatngs
Somatic copy number analysis using WGS paired end wholegenome sequencing
bbmap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
bccluster
my firsr remote app
biocluster
Tutorial on building a computing cluster for bioinformatics
biopython
My fork of the official Biopython repository, used for experimental branches etc
bioruby
bioruby
bioruby-biolinux
Meta package for BioLinux distribution
bioruby-faster
A fast and simple parser for Fasta / FastQ files
bioruby-gem
BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package
bioruby-ngs
This plugins is intended to wrap the common software used for Next Generation Sequencing data
bioruby-plugin-graphics
Bio::Graphics is a ruby library for visualizing annotations on chromosomes
bioruby-ucsc-api
Ruby UCSC API: An API for the UCSC Genome Database
clustermaker2
Cytoscape 3 Clustering App
combat.py
python / numpy / pandas / patsy version of ComBat for removing batch effects.
complexheatmap
make complex heatmaps as well as self define annotation graphics
cptac-proteomics-pipeline
The research and processing repo for import of CPTAC data into cBioPortal
cytoscape
Parent project for all Cytoscape 3 Sub-projects.
cytoscape-plugins
The OpenBEL Framework Cytoscape Plugins project enables Cytoscape to access and analyze Knowledge Assembly Models.
cytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.js
cytoscape2
Cytoscape 2.x series code.
cytoscape_course
This is a basic cytoscape course intended for beginners to get training with biological network analysis.
cytoscape_tutorials
A set of Cytoscape tutorials for my students
d3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
decoder
Matlab repository for DECODER
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
disambiguate
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
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