hzi-bifo Goto Github PK
Name: BIFO
Type: Organization
Bio: Alice McHardy's lab @ HZI
Location: Braunschweig, Germany
BIFO's Projects
ribodetector
Accurate and rapid RiboRNA sequences Detector based on deep learning
ridgerace
ridge regression for continuous ancestral character estimation on phylogenetic trees
rnapreprocess
roary
Rapid large-scale prokaryote pan genome analysis
sankoff
scelestial
scelestial-paper-materials-devel
The lineage tree reconstruction method based on Steiner tree problem - dataset and test scripts for the paper (development version)
sdplots
This repository contains all published data.
sdplots_vaccineupdates
Vaccine strain recommendations for human influenza A viruses with the method described in Klingen et al. 2017
selection_docker
dN/dS calculation based on codeml, fastcodeml and slimcodeml
seq2geno
Reproducible and comprehensive sequence analyses for single-species bacterial dataset
seq2geno-dev
Computational pipeline for genomic features of bacterial population
seq2geno2pheno
snakemake-workflow-univec-removal
A small Snakemake workflow to remove contaminating vector sequences from raw sequencing data using UniVec.
snowball
taxator-tk
A set of programs for the taxonomic assignment of nucleotide sequences
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun metagenomic data
traitar
From genomes to phenotypes: Traitar, the microbial trait analyzer
which_tree
Testing of phylogenetic inference methods
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