hzi-bifo Goto Github PK

haploflow_supplementary

Helper scripts and other supplementary material for Haploflow

hcv-mds

Neutralization maps for HCV data

hmmvis

basic visualization of hmm profile matches to multiple fasta files

i.vaccpipeline

A multi-omic approach to predict respiratory infection susceptibility.

importin_a7-anp32a-interaction

In this repository, we deposit the information about the Importin-a7 and ANP32 docking results.

lotus

Scripts related to the Lotus japonicus root microbiota manuscript Zgadzaj, Garrido-Oter et al., 2016

mdasim

MDAsim 2: a Multiple Displacement Amplification Simulator (continued development from: https://sourceforge.net/projects/mdasim/)

mglex

MGLEX – A Python Package for Probabilistic Modeling and Binning of Metagenomes

mi-tip

Workflow to compute a phylogeny from genomic short read data of microbial strains without pre-computed assemblies

micropheno

MicroPheno Project

model-t

oligomm

Scripts to reproduce analysis for Brugiroux et al. manuscript

patchdetection

patchinference

This repository contains the source code to the graph-cut clustering algorithm.

phylogeny-of-single-cells

snakemake workflow for the phylogenetic reconstruction of single cell lineages from multiple displacement amplified single cell DNAseq

phylogeography_paper

This repository contains all data and code for the manuscript "Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic".

plasmidminer

:mag: in silico plasmid extraction

ppsplus

predicting_pa_amr_paper

ptree

quasimodo

QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture

ribodetector

Accurate and rapid RiboRNA sequences Detector based on deep learning

ridgerace

ridge regression for continuous ancestral character estimation on phylogenetic trees

rnapreprocess

roary

Rapid large-scale prokaryote pan genome analysis

sankoff

scelestial-paper-materials-devel

The lineage tree reconstruction method based on Steiner tree problem - dataset and test scripts for the paper (development version)

sdplots

This repository contains all published data.

sdplots_vaccineupdates

Vaccine strain recommendations for human influenza A viruses with the method described in Klingen et al. 2017

selection_docker

dN/dS calculation based on codeml, fastcodeml and slimcodeml