train clair with single strands? about clair

[aquaskyline]

Suggestion well noted. If we got data, we could definitely train a model with single strand data. I'm not sure but is there any single-strand data for GIAB samples, or for any samples with known variants?

[marcotoffoli]

The SAM/BAM files produced from Oxford Nanopore can be separated into single strands, so any data produced with ONT can be analyzed this way.
I have a script that extract single strand data from ONT sequencing and I am happy to share if needed.

[aquaskyline]

That's great, could you please share your script with me at rbluo @ cs.hku.hk

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On Thu, Mar 19, 2020 at 7:03 PM marcotoffoli ***@***.***> wrote: The SAM/BAM files produced from Oxford Nanopore can be separated into single strands, so any data produced with ONT can be analyzed this way. I have a script that extract single strand data from ONT sequencing and I am happy to share if needed. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#22 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAG2SOKZRIJ65CVTOY4LML3RIH3ZNANCNFSM4LMEG4AA> .

-- Laurent