Comments (4)
Not likely because we are preparing a new version called Clair3, we don't have a firm release date for it but it should be around May. In the new version, all models are trained on guppy >=3.6.0. Not sure about bonito because not much GIAB data were called using bonito at the moment.
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That's great news re: the new release!
For GIAB data, I'm pretty sure the fast5 are available for download (from the Shasta paper), and guppy 4.4.2 can run Bonito models, if you want to call it yourself.
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Clair3 is now available at https://github.com/HKU-BAL/Clair3.
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Related Issues (20)
- Specific use case HOT 1
- quality threshold advice HOT 1
- Clair and Clairvoyante having trouble with bam file from human transcript alignments HOT 1
- Automatically call SNPs for all contigs in fasta file? HOT 2
- model quantization experiments HOT 2
- Demo Error: Missing testingData HOT 2
- ValueError: invalid literal for int() with base 10: 'CCA' HOT 1
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- sars-cov2 model HOT 1
- Models for guppy v5 basecalled Nanopore data HOT 1
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- downsampled BAM cannot download HOT 1
- Clair force calling using callVarBam calls more number of variants than included in a vcf file. HOT 3
- error using on HPC HOT 1
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- Running issue!!
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