Comments (1)
Hi,
I tried to solve the problem and I found that the error occurs in the command parallel --joblog ./evc.log -j${THREADS} \ "${PYPY} ${CLAIR} ExtractVariantCandidates \ --bam_fn ${BAM_FILE_PATH} \ --ref_fn ${REFERENCE_FILE_PATH} \ --can_fn ${CANDIDATE_FOLDER_PATH}/can_{1} \ --ctgName ${CHR_PREFIX}{1} \ --gen4Training" ::: ${CHR[@]}
. The reason for this error is that there is no intervaltree
module in pypy3, but in virtualenv clair-env
I have installed this module. So I replace ${PYPY}
with python
and the problem is solved.
Neng Huang
from clair.
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from clair.