gmod / jb2export Goto Github PK
View Code? Open in Web Editor NEWA CLI program to generate static image exports for jb2
License: Apache License 2.0
A CLI program to generate static image exports for jb2
License: Apache License 2.0
Silently fails, no error or warning
Run yarn test produces empty out.svg
To test, turn off wifi on compy
Similar to jigv
Running the await renderToSvg sometimes takes significantly shorter than the total program time e.g. 5 seconds vs 25 total
The program console.error logs the output to show rendering time and total program completion is printed by node by default
jb2export --fasta volvox.fa --configtracks refseq --loc ctgA:1-100
maybe it's my computer but it's causing some fuss
Flamegraph from 0x
The draw mismatches and color scale pops out significantly
command
From https://github.com/davidmarkclements/0x
0x dist/index.js > out.svg
Probably allow separate ones
On branch jexl_updates and jbrowse-components branch export_svg_wiggle_jexl
I get this error
$ node dist/index.js --config data/config.json --defaultSession --out out.svg
Error: no plugin manager defined for renderer DivSequenceRenderer
at new RendererType (/home/cdiesh/src/jb2export/node_modules/@jbrowse/core/pluggableElementTypes/renderers/RendererType.js:62:13)
at DivSequenceRenderer.<anonymous> (/home/cdiesh/src/jb2export/node_modules/@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType.js:48:291)
at new ServerSideRenderer (/home/cdiesh/src/jb2export/node_modules/@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType.js:59:19)
at DivSequenceRenderer._createSuperInternal (/home/cdiesh/src/jb2export/node_modules/@jbrowse/plugin-sequence/dist/plugin-sequence.cjs.development.js:208:24)
at new DivSequenceRenderer (/home/cdiesh/src/jb2export/node_modules/@jbrowse/plugin-sequence/dist/plugin-sequence.cjs.development.js:2122:19)
at /home/cdiesh/src/jb2export/node_modules/@jbrowse/plugin-sequence/dist/plugin-sequence.cjs.development.js:2209:16
at /home/cdiesh/src/jb2export/node_modules/@jbrowse/core/PluginManager.js:307:26
at /home/cdiesh/src/jb2export/node_modules/@jbrowse/core/PluginManager.js:87:20
at Array.forEach (<anonymous>)
at /home/cdiesh/src/jb2export/node_modules/@jbrowse/core/PluginManager.js:86:26
Consequence of mainthreadrrpc, but may be overcome by upgrading deps
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