gmod Goto Github PK

abortable-promise-cache

add AbortController support to a cache of async requests

apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

apollo-gmod-js

Developed to connect to Apollo 3 (and maybe Apollo2)

apollo3

JBrowse 2 plugin for editing annotations on an Apollo server

apollo3server

Apollo 3 Server: Grails 4 + Neo4j 3.5 + JB2

auspice

Web app for visualizing pathogen evolution

bam-js

Parse BAM and BAM index files in javascript for node and the browser

bbi-js

Parser for bigwig and bigbed files

bed-js

A parser for the BED format including autoSql support

bgzf-filehandle

Nodejs filehandle for reading bgzip+.gzi compressed files

binary-parser

A fork of binary-parser for usage in GMOD data parsers

bio-chado-schema

Perl modules for working with a Chado schema

bio-gmod-blast-graph

display a graphical summary of a BLAST report

bio-graphics

Generate GD images of biological sequences and annotations

chado

the GMOD database schema

chado_tools

Chado data loaders and other tools

cmap

A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.

coordinate-transform

Coordinate transformation library used by Apollo.

covariants

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

cram-js

Read CRAM v3 and v2 in node or in the browser

dash_jbrowse

A suite of Dash components for JBrowse's embeddable components

demo-jbconnect-hook

docker-apollo

:whale: Apollo 2.X Docker Image

docker-compose-galaxy-annotation

:whale::bar_chart::books: Galaxy + Apollo + JBrowse as a docker-compose.yml

ensembl-to-jbrowse

scripts to automagically create a JBrowse instance from an Ensembl FTP URL

faidx-js

Index a FASTA file similar to `samtools faidx` using pure js

gbrowse

the Generic Genome Browser

gbrowse-adaptors

gbrowse_to_jbrowse

Tools for migrating from GBrowse to JBrowse.

generic-filehandle

use a subset of the NodeJS promise-based file handle API to access both local and remote files