Comments (4)
I just pushed a new release (0.4.2) with any recent changes and it installs fine from pypi now. The new pypi url is https://pypi.python.org/pypi/bioblend/0.4.2
Thanks for reporting this and let me know if you have any more trouble.
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Thank you for the very quick reply. I don't really know how this works, because the files are not in the master branch, but are you sure that the failed merge files are removed from this version, because I think I find them again?
my problem is that I try to install bcbio-nextgen and there these files create problems:
Installing collected packages: bioblend, cutadapt, HTSeq, ipython-cluster-helper, joblib, Logbook, Mako, psutil, pybedtools, py-descriptive-statistics, sh, bcbio-nextgen, poster, simplejson, mock, MarkupSafe
Running setup.py install for bioblend
File "/groups/csf-ngs/bin/workflow/bcbio/anaconda/lib/python2.7/site-packages/bioblend/galaxyclient.py.BACKUP.5106.py", line 126
<<<<<<< HEAD
^
SyntaxError: invalid syntax
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You're right - there were some files left over from various branches. I removed them and uploaded the file again so should be good to go now. Sorry about that.
Before, I used pip to install it and did not have any issues so perhaps could try that as well? (pip install bioblend)
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Thanks a lot.
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Related Issues (20)
- Method to cancel a job
- Add type annotations to BioBlend API HOT 2
- Rebuild docs with sphinx-apidoc
- Add an `invoke()` method to the BioBlend.objects `Workflow` class
- Fix unreliable tests
- Add tests for bioblend.toolshed
- 'GalaxyInstance' raises AttributeError when instantiated with email & password combination HOT 2
- Incorrect PyYAML version for bioblend 0.9.0 - 0.16.0 HOT 1
- Getting abosl HOT 1
- Error when trying to get ids of workflow outputs HOT 13
- partial workflow invocation HOT 9
- Drop cloudlaunch support ? HOT 4
- Add support for parameter "all" in get_histories HOT 2
- Tool search in Toolshed: number total results HOT 6
- File name displayed as Pasted Entry for file uploaded using upload_file_contents HOT 2
- Downloading a file from a shared data library HOT 3
- Extend bioblend to support the new notification API HOT 3
- Bioblend reporting workflow as failed while workflow is running or completed successfully. HOT 6
- workflows.refactor_workflows fails on subworkflows HOT 14
- Allow Session Cookies in Requests HOT 1
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