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afgane avatar afgane commented on June 22, 2024

I just pushed a new release (0.4.2) with any recent changes and it installs fine from pypi now. The new pypi url is https://pypi.python.org/pypi/bioblend/0.4.2

Thanks for reporting this and let me know if you have any more trouble.

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idot avatar idot commented on June 22, 2024

Thank you for the very quick reply. I don't really know how this works, because the files are not in the master branch, but are you sure that the failed merge files are removed from this version, because I think I find them again?

my problem is that I try to install bcbio-nextgen and there these files create problems:

 Installing collected packages: bioblend, cutadapt, HTSeq, ipython-cluster-helper, joblib, Logbook, Mako, psutil, pybedtools, py-descriptive-statistics, sh, bcbio-nextgen, poster, simplejson, mock, MarkupSafe
    Running setup.py install for bioblend
        File "/groups/csf-ngs/bin/workflow/bcbio/anaconda/lib/python2.7/site-packages/bioblend/galaxyclient.py.BACKUP.5106.py", line 126
          <<<<<<< HEAD
           ^
     SyntaxError: invalid syntax

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afgane avatar afgane commented on June 22, 2024

You're right - there were some files left over from various branches. I removed them and uploaded the file again so should be good to go now. Sorry about that.

Before, I used pip to install it and did not have any issues so perhaps could try that as well? (pip install bioblend)

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idot avatar idot commented on June 22, 2024

Thanks a lot.

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