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adv-r

Advanced R programming: a book

airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

angularjs-requirejs-seed

angularjs-toaster

webjar for AngularJs-toaster

automate-web-stuff

automate some web sites (NCBI)

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bedtools

A flexible suite of utilities for genome arithmetic. That is, set theory on genomic features.

best

Bam Error Stats Tool (best): analysis of error types in aligned reads.

betterplay

betterplay

bioc_docker

Docker containers for Bioconductor

cite-seq-count

A tool that allows to get UMI counts from a single cell protein assay

deseq2analysis

deseq2analysis

devtools

Tools to make an R developer's life easier

dice-maven

DICE Maven Repository

faster

A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust

fsom

A tiny C library for managing SOM (Self-Organizing Maps) neural networks

galaxy

Galaxy applications for Cmeth and Zinbra

idoplots

R utility functions for plotting

idot.github.com

idot.github.io

my blog

meinheld

Meinheld is a high performance asynchronous WSGI Web Server (based on picoev)

metabase-cli

Metabase Import Export tool

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

ng-table

Simple table with sorting and filtering on AngularJS

pipspeak

a CLI tool to whitelist filter pipseq reads and convert them to a 10X-style format

play-angular-slick-starter

my template with play angular rjs slick

play-slick

Slick Plugin for Play

prop_venn

Proportional Venn Diagrams for 2 and 3 Sets using Google Charts

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.