Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
License: Apache License 2.0
-submission log file. currently errors from pipeline called scripts are captured and hidden from user
-initial file existence check. for fastqs and ref.
-differential steps for RNAseq and ChIPseq
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