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pydeface-gear's Introduction

pydeface-gear

A flywheel gear to remove facial structure from MRI images.

Leverages FSL, Python 3, NumPy, NiBabel, and Nipype to coregister a provided image to a template and removes facial features by removing the facial structure in accordance with the registration template and face mask. User may provide a template and face mask.

Website

The source code of pydeface can be found at github

Usage Notes

inputs

  • infile (required): The NIfTI file to remove facial structure from
  • template (optional): The optional template image that will be used as the registration target instead of the default.
  • facemask (optional): The optional face mask image that will be used instead of the default.

parameters

  • cost: FSL-FLIRT cost function. "mutualinfo" default.
  • nocleanup: Do not cleanup temporary files. On by default.
  • verbose: Show additional status prints. On by default.

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