fbeyer89 / rsv_rsanalysis

preprocessing and analysis scripts for the Reveratrol study (https://doi.org/10.1016/j.neuroimage.2018.03.023)

preprocessing of 3T resting-state data from RESVERATROL-Study (NRO-148)

• functional_preprocessing: nipype-based scripts for resting-state preprocessing (see README in folder for more details)

• quality_reports: nipype-based scripts for quality control

  • quality_reports/julia_qa/ -> quality reports based on Julia Huntenburgs scripts (generate_report_part2.py)
  • quality_reports/poldrack_qa -> quality reports based on Russ Poldrack (QA_and_header_fix_wf.py)
  • compare_meanFD/ -> comparison of mean FD estimated by two pipelines (detection of error related to angle/radians in calculation of FD)
  • hippocampal_subfields/ -> quality control of hippocampus connectivity (generate_report.py)

• seedbased_connectivity: nipype-based scripts to generate hippocampus connectivity

  • after_scrubbing_FS_derived_hc_ant_post (seed based connectivity based on Freesurfer ROIs & scrubbed data)
  • SCA (seed based connectivity absed on MNI coordinates)
  • FS_derived_hc_ant_post (seed based connectivity based on Freesurfer ROIs)
  • transform_HC_to_MNI (transform HC maps to MNI space for quality control)

• import_from_afs.sh (get data from AFS repository)