evolgeniusteam / evolviewdocumentation Goto Github PK
View Code? Open in Web Editor NEWDocumentation for Evolview
Documentation for Evolview
Hi I am trying to add leaf decorations to a tree as I have before and this time around I cannot seem to get the unfilled shapes to display.
For example:
Arthrobacter_koreensis_5J12A "square,red:red"
results in a filled red square, however:
Arthrobacter_koreensis_5J12A "square,white:red"
results in no observable leaf label.
I am not sure if I am doing something wrong here or not. Attached is my file used for leaf label decoration.
Thanks.
all_pgpr_leafnodes7.txt
It always show "validating your tree" when i upload a large tree that including about 300 genes.
I have been using evolview quite a bit this last week and if I log out and then back into my account the trees I have been working on along with all the labelling datasets are gone. This has happened a number of times now and for different trees and projects. It seems the trees are not being stored. Can you please advise?
Hello!
Once we have finished the drawing, we cannot save it on our account, and when I go back to my account, the finished drawing is lost and I can only see the original, undecorated, bare tree
Thank you for your help!
Best regards
http://120.202.110.254:8280/evolview
这个地址卡不开了,
http://www.evolgenius.info/evolview
这个还可以用
The example is used to draw Pies displayed on internal and leaf branches, while I need to show data by pie at the external tree. Does there exist any examples that could be applied? Many thanks.
I don't find the function about collapsing tree, do you consider to add this function?
I would like to generate a circular tree with group labels similar to group label style 5
, I could successfully draw group label style 4, but I could not understand the code details of group label style 5
mentioned in the documentation section. Even I could not find group label style 5
codes in the DEMOS (22 trees)
section, the DEMOS
section has the codes up-to group label style 4
. Therefore, kindly provide the example code for group label style 5
.
Thank you.
Hi,
it seems that the retrieve password function is broken. Everytime I click it it says "fail to connect server, please try again later".
Hi,
Evolview is a good way to plot a beautiful tree.
But I find that it cannot plot a unroot tree.
Can you update a new function to plot an unrooted tree?
Lan
Hello evolgeniusteam,
I used this tool to deal my tree with about 70 leaves.
But when I tried to export pdf file, the result had no leaf labels.....
I don't know how to solve the problem.
Thank you for your great work and look forward to your reply.
Hi
I have used Evolview for a period of time and I found it is very useful in formatting the trees.
I am a casul user.Today, I want to fomat my tree, but, i can't find my account, and i can't find my tree,can you help me to find my tree?
when i use uploads colors for branches, it always appears error: at least one valid colorset data should be given; data not upload/ updated.
你好!
用MEGA绘制的nwk文件,现在不能将树导入,进行美化。已经试过用原来可以美化的文件,现在也不能导入 ,你可以帮我吗?
感谢你的帮助!
此致敬礼!
Dear Evolview team,
I am still unsing the old version of evolview (v2) because my files were not transferred to the new one (and you can't increase the circular span to "close" the tree (put it at 360°) in the new version). Now I have problems downloading my trees. It always appears a error message (Oops... an error has occurred, please try again later!!).
Ich would be glad, if you could help me.
Hi,
This is a nice tool!
Now if I have 3 groups to plot, I notice that the bar is shown in the order of the groups .
How can i do that if I want to show them in the order of group‘s value just like the 100% stacked plot ?
Thank you!
I cannot log in to the system normally, nor can I use the password to reset the system.
Dear,
I really appreciate your tool and have used and cited it a lot.
However, when I finished editing and beautifying the phylogenetic tree, I couldn't find a way to save it. How do I save the result so that I can still see it the next time I log in.
Best,
@evolgeniusteam
I try to acces to the page and when I put my user and pass, this message appears:
email and password do not match or account does not exist!!
Even if I enter in the option Try Me, the message appears.
email and password do not match or account does not exist!!
I try to run the local version and the login section doesnt work either, my user and password doesn't work.
Hello,
I am using the style=multiple option for bootstrap values. I am also using show=0 for bootstrap values of 100. The option is effective for multiple bootstrap values of 100/100/100, but if the values are 100/100/88, all values are hidden (okay for first two, but I don't want 88 hidden). If they are 78/78/100, then all values are shown. It seems that the decision to show or not show is dependent on the first value in the multiple bootstrap value string. Is it possible to show or not show the individual bootstrap values, or replace 100 with a character such as "*"?
Dear,
I've used Evolview for a while now, and enjoyed it very much so far.
I wanted to use it again now, but I can't seem to login in. Are the servers down?
When I try to retrieve my password by using 'forgot password', they say it can't connect to the server.
To be honest, I'm not completely sure I'm using the correct password since it has been a while, but I already tried every possibility.
Kind regards,
Vincent
Dear,
I've used Evolview for a while now, and enjoyed it very much so far.
I wanted to use it again now, but I can't seem to login in. Are the servers down?
When I try to retrieve my password by using 'forgot password', they say it can't connect to the server.
My email address is [email protected], looking forward to your reply. Thank you!
Kind regards,
mo
Once we have finished the drawing, we cannot save it on our account, and when I go back to my account, the finished drawing is lost and I can only see the original, undecorated, bare tree
2. It is not possible to upload the exported diagram made on the previous website here, it keeps showing an error.
when i did the branch color, leaf color, leaf background color, why there is always an error pop out " error: error: at least one valid colorset data should be given; data not upload/ updated "?
Hello,
I cant upload a dataset to change the leaf background color.
I have this style of data: (Uniprot code + Hex color format)
B0ZB56 # a618ff
With the data set " leaf labels" works
Thanks
Daniela
Hello,
I have been trying to upload "Group labels" and also "data color shapes" to my tree, but I can't see the submit button :/. I'm using Firefox on macOS catalina which I saw works better than Chrome and Safari.
Finally I could upload the data using Ubuntu , but my tree is not saved as a project, so I couldn't access again from my account on mac.
Thanks for the new version of the server is really useful!
Hi!
I am used to use the version 2 of Evolview, but I can not open the web page these days, could you please help me with it?
Thank you for your help!
Best regards
Hi there,
is it possible to download the whole project (with the annotations), not just nexus/newick/svg file?
Best
Hi,
I have used Evolview for a period of time and I found it is very useful in formatting the trees.
But recently, I found there is a login issue: I cannot login or register a new account.
Could you please give me some help?
david
Hi!
I really appreciate your tool and have used and cited it a lot :) However, now the server seems to be down since some day back. At least I cannot access it from Sweden. Is this something you have noted?
Best,
Kaisa
Thank you for developing this tools, I found it cannot plot group label ,I had try as the demo datssets showed ,but no one worked.
Thank you
Dear,
I noticed that I'm unable to log in into the old version of Evolview (probably due to the fact the there is an not secure connection).
Is it possible to change this?
Kind regards,
Vincent
I am being unable to use datasetgrouplabel, I have checked the documentation and tested several possibilities like trying to label only one gene without any positive result. Help please!
I can't upload my tree file. The status was "validating your tree" though I waited for a long time. While when I tested with a tree file in the showcases, it can upload quickly...
Hello!
I am used to use the old version of Evolview (version 2), but I can not open the web page these days, could you please help me with it?
The web page of version 3 is working well, however I want to use version2.
Thank you for your help!
Best regards
Thanks for this useful tool, and how do I customise the size of collapsed triangles?
I saw the height of a triangle is proportional to the number of leaf nodes, while I want set the width proportional to the number of leaf nodes, too.
Thank you again!
Sometime the underline of gene_id will vanish.
e.g."NC_013790" becomes "NC 013790"
For shortcases as well as my personal tree files.
Dear,
I'm unable to login into my account (if I say I forgot my password it cannot access the server).
I faced this problem before, and then it was needed to reset my password.
Is it possible to do this again ([email protected])?
Kind regards,
Vincent
Dear,
I've used Evolview for a while now, and enjoyed it very much so far.
I wanted to use it again now, but I can't seem to login in. Are the servers down?
When I try to retrieve my password by using 'forgot password', they say it can't connect to the server.
my email address is [email protected], looking forward to your reply.
Kind regards,
zhiwei
Dear Evolgeniusteam
I forgot my password, when I try to reset it, I got a message " fail to connect the server ". I have tried several times during the day and I get the same message
Could you please help me
Johanna
一段时间没有登陆我的账号,现在重新登陆发现账号不存在了!
我的账号所用邮箱是[email protected],请问能帮忙找回吗?里面有我的重要数据,找回后可以通过该邮箱通知我。
谢谢您!
Can Evolview reroot tree at user-defined node?
I would like add bar for my tree, I only have one group, I noticed that Evolview could specify different color for different groups, but I would like to specify different color for different leaves within a group, could Evolview resolve it ? Thanks in advance.
The color area is enlarged or reduced, which causes the color area to not appear normally
Hi ,
Could you help me in setting the branch line width? Because the line is too thin.
Thank you !
Jian
The tree size is around 477 KB, analyzed by BEAST. However, when I attempt to upload it, the website displays an "Out of Memory" error. My computer has 32 GB of RAM. I'm wondering if the issue is due to insufficient RAM or another reason. If I need to upgrade the RAM, how much should I increase it by?
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.