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scrna.seq.course

Analysis of single cell RNA-seq data course

shell-novice

Software Carpentry introduction to the shell for novices.

simpletidy_genecoex

A simple gene co-expression analyses workflow powered by tidyverse and graph analyses

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

slides

Presentations for programming courses

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

stat545

A :book: on data wrangling, exploration, & analysis with R - created by Jenny Bryan, made with bookdown

thinkpython2

LaTeX source and supporting code for Think Python, 2nd edition, by Allen Downey.

tiny_python_projects

Code for Tiny Python Projects (Manning, 2020, ISBN 1617297518). Learning Python through test-driven development of games and puzzles.

videossamplecode

Code from the mCoding sample videos

virtual-classroom

Scripts for automating GitHub classrooms.

whirlwindtourofpython

The Jupyter Notebooks behind my OReilly report, "A Whirlwind Tour of Python"

wiki

workshop_omics_integration

Workshop in omics integration and systems biology

workshop_omicsint_ismbeccb

Repository for the ISMB/ECCB workshop "A practical introduction to multi-omics integration and network analysis"

you-dont-know-js

A book series on JavaScript. @YDKJS on twitter.

zhang_bioinf_python_scripts

scripts for parsing PDB, fasta, and GO