dd-decaf / iloop-to-model Goto Github PK
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License: Apache License 2.0
Power model service with ILoop data
License: Apache License 2.0
The response from this endpoint resembles the one we receive from model service, but it is a bit different:
growthRate
should be growth-rate
(the best would be to update it in model service, use camelCase if possible)
added and removed reactions are missing although they are included in the messages.
Is it possible to add them?
make simple workaround to the problem of not being able to call bigg's http
For example, for C25 B3 in the iloop, the reaction ARGSS is removed although the responsible gene argG is not deleted?
done: organisms names come with 3-letter ids
The iloop-to-model service is failing with the latest version of iloop due to an issue fixed in potion-client v2.5.1.
[iloop-to-model-1]2017-05-05T09:09:17.725263194Z [2017-05-05 09:09:17 +0000] [15] [ERROR] Error handling request
[iloop-to-model-1]2017-05-05T09:09:17.725318530Z Traceback (most recent call last):
[iloop-to-model-1]2017-05-05T09:09:17.725328484Z File "/usr/local/lib/python3.5/site-packages/aiohttp/web_server.py", line 62, in handle_request
[iloop-to-model-1]2017-05-05T09:09:17.725336720Z resp = yield from self._handler(request)
[iloop-to-model-1]2017-05-05T09:09:17.725349157Z File "/usr/local/lib/python3.5/site-packages/aiohttp/web.py", line 270, in _handle
[iloop-to-model-1]2017-05-05T09:09:17.725356950Z resp = yield from handler(request)
[iloop-to-model-1]2017-05-05T09:09:17.725364297Z File "/iloop-to-model/iloop_to_model/app.py", line 21, in wrapper
[iloop-to-model-1]2017-05-05T09:09:17.725372010Z iloop = iloop_client(api, token)
[iloop-to-model-1]2017-05-05T09:09:17.725379224Z File "/iloop-to-model/iloop_to_model/__init__.py", line 19, in iloop_client
[iloop-to-model-1]2017-05-05T09:09:17.725387020Z verify=False
[iloop-to-model-1]2017-05-05T09:09:17.725394054Z File "/usr/local/lib/python3.5/site-packages/potion_client/__init__.py", line 32, in __init__
[iloop-to-model-1]2017-05-05T09:09:17.725401717Z self._fetch_schema()
[iloop-to-model-1]2017-05-05T09:09:17.725408894Z File "/usr/local/lib/python3.5/site-packages/potion_client/__init__.py", line 43, in _fetch_schema
[iloop-to-model-1]2017-05-05T09:09:17.725422104Z resource = self.resource_factory(name, resource_schema)
[iloop-to-model-1]2017-05-05T09:09:17.725429420Z File "/usr/local/lib/python3.5/site-packages/potion_client/__init__.py", line 114, in resource_factory
[iloop-to-model-1]2017-05-05T09:09:17.725452870Z for property_name, property_schema in schema['properties'].items():
[iloop-to-model-1]2017-05-05T09:09:17.725460014Z File "/usr/local/lib/python3.5/site-packages/potion_client/resource.py", line 56, in __getitem__
[iloop-to-model-1]2017-05-05T09:09:17.725466887Z return self._properties[item]
[iloop-to-model-1]2017-05-05T09:09:17.725473234Z KeyError: 'properties'
From @phantomas1234 on August 30, 2017 10:30
null
Copied from original issue: DD-DeCaF/metabolica-ui-yields#8
From @hredestig on April 4, 2017 8:52
done: model service can adjust bounds based on multiple samples
Copied from original issue: DD-DeCaF/simulations#6
done: after selecting an organism it is possible to get only the experiments with this organism
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