benjasanchez Goto Github PK

academic-kickstart

code for https://www.benjasanchez.com/

amici

Advanced Multilanguage Interface to CVODES and IDAS

carveme

CarveMe: genome-scale metabolic model reconstruction

citest

cmaputil

cobrapy

COBRApy is a package for constraint-based modeling of biological networks

cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

copasi

COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

datascience_project3

Course Project of "Getting & Cleaning Data" (Coursera)

datasharing

The Leek group guide to data sharing

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

forking-workflow-exercise

Exercise to practice collaborative forking workflow.

gecko

Toolbox for including enzyme constraints on a genome-scale model.

git_collaboration

Training repo for Git collaboration workshop

git_intro

Training repo for Git intro workshop

goatools

Python scripts to find enrichment of GO terms

gofowlme

just cuz

heme_production_ecyeastgem

hippo

An iterative re-parametrization method for identification and calibration of bioreactor models, written in MATLAB

ide-examples

Examples to demonstrate the usage of IDE.

map-runs

map runs into a single HTML world map

mixed-bag

Documentation, misc. notes, wild scripts, etc. Mostly for future-self.

notebooks

jupyter notebooks for poking and prodding

pesto

PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.

raven

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

recipe

best guacamole ever

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

reproducible-research-init

Research project initialization and organization following reproducible research guidelines

ry-dfba

A MATLAB package for robust dynamic genome-scale metabolic modeling of Saccharomyces cerevisiae

sysbioraffle

Raffle app for selecting people in the @SysBioChalmers group