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This project forked from goekelab/bioinformatics-workflows

5.0 5.0 3.0 10.19 MB

minimal example implementations for bioinformatics workflow managers

License: MIT License

Nextflow 4.56% Python 55.96% WDL 10.04% Jupyter Notebook 4.22% Go 11.26% Shell 0.68% Groovy 3.11% Common Workflow Language 10.16%

bioinformatics-workflows's Introduction

Hi there ๐Ÿ‘‹

  • I have over 12 years of computational biology experience, 6 years of molecular cancer biology and 4 years of immunology experience.
  • I am a computational biologist working on (single-cell) genomics, epigenomics and (spatial) transcriptomics.
  • I use machine learning approaches to find new drug targets for cancer patients;
  • I use google cloud and Terra for large scale data processing;
  • I use R primary for data wrangling and visualization in the tidyverse ecosystem;
  • I use python for writing Snakemake workflows and reformatting data;
  • I am a unix geek learning shell tricks almost every month; I care about reproducible research and open science.

Learn more about me at https://tommytang.bio.link/

Join my FREE newsletter to learn computational biology https://divingintogeneticsandgenomics.ck.page/newsletter

Subscribe to my chatomics youtube channel https://www.youtube.com/@chatomics

You do not need to do a master's degree to learn computational biology. Grab my book to learn computation at here

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